Adaptive evolution: evaluating empirical support for theoretical predictions

EVIDENCE OF ADAPTATION FROM ANCESTRAL VARIATION IN YOUNG POPULATIONS OF BEACH MICE

(2012) Vera S. Domingues et al.   EVOLUTION

The Effects of Deleterious Mutations on Evolution at Linked Sites

(2012) Brian Charlesworth   GENETICS

Adaptive Evolution and Effective Population Size in Wild House Mice

(2012) M. Phifer-Rixey et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evidence for Widespread Positive and Purifying Selection Across the European Rabbit (Oryctolagus cuniculus) Genome

(2012) M. Carneiro et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

Evidence of widespread selection on standing variation in Europe at height-associated SNPs

(2012) Michael C Turchin et al.   NATURE GENETICS

Leveraging models of cell regulation and GWAS data in integrative network-based association studies

(2012) Andrea Califano et al.   NATURE GENETICS

Genome-wide scans provide evidence for positive selection of genes implicated in Lassa fever

(2012) K. G. Andersen et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Gain-of-Function Polymorphism Controlling Complex Traits and Fitness in Nature

(2012) K. V. S. K. Prasad et al.   SCIENCE

Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes

(2012) J. A. Tennessen et al.   SCIENCE

An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People

(2012) M. R. Nelson et al.   SCIENCE

Recent Explosive Human Population Growth Has Resulted in an Excess of Rare Genetic Variants

(2012) A. Keinan et al.   SCIENCE

Experimental evolution

(2012) Tadeusz J. Kawecki et al.   TRENDS IN ECOLOGY & EVOLUTION

Sex Pheromone Evolution Is Associated with Differential Regulation of the Same Desaturase Gene in Two Genera of Leafroller Moths

(2012) Jérôme Albre et al.   PLoS Genetics

Quantifying the Impact of Gene Flow on Phenotype-Environment Mismatch: A Demonstration with the Scarlet Monkeyflower Mimulus cardinalis

(2011) John R. Paul et al.   AMERICAN NATURALIST

Genetic adaptation of the antibacterial human innate immunity network

(2011) Ferran Casals et al.   BMC EVOLUTIONARY BIOLOGY

Comparing the adaptive landscape across trait types: larger QTL effect size in traits under biotic selection

(2011) Allison M Louthan et al.   BMC EVOLUTIONARY BIOLOGY

The Same Regulatory Point Mutation Changed Seed-Dispersal Structures in Evolution and Domestication

(2011) Nicolas Arnaud et al.   CURRENT BIOLOGY

THE QTN PROGRAM AND THE ALLELES THAT MATTER FOR EVOLUTION: ALL THAT'S GOLD DOES NOT GLITTER

(2011) Matthew V. Rockman   EVOLUTION

THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE

(2011) Sam Yeaman et al.   EVOLUTION

INVASION OF GENE DUPLICATION THROUGH MASKING FOR MALADAPTIVE GENE FLOW

(2011) Alexey Yanchukov et al.   EVOLUTION

Copy-Number Variation: The Balance between Gene Dosage and Expression in Drosophila melanogaster

(2011) Jun Zhou et al.   Genome Biology and Evolution

Expression Level Drives the Pattern of Selective Constraints along the Insulin/Tor Signal Transduction Pathway in Caenorhabditis

(2011) Richard Jovelin et al.   Genome Biology and Evolution

A systematic characterization of genes underlying both complex and Mendelian diseases

(2011) Wenfei Jin et al.   HUMAN MOLECULAR GENETICS

Consistent effects of a major QTL for thermal resistance in field-released Drosophila melanogaster

(2011) Volker Loeschcke et al.   JOURNAL OF INSECT PHYSIOLOGY

Evolution of the TOR Pathway

(2011) Teunis J. P. van Dam et al.   JOURNAL OF MOLECULAR EVOLUTION

Network-Level and Population Genetics Analysis of the Insulin/TOR Signal Transduction Pathway Across Human Populations

(2011) P. Luisi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Polymorphism, Divergence, and the Role of Recombination in Saccharomyces cerevisiae Genome Evolution

(2011) A. D. Cutter et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

(2011) Xiangchao Gan et al.   NATURE

Chromosomal rearrangements maintain a polymorphic supergene controlling butterfly mimicry

(2011) Mathieu Joron et al.   NATURE

Whole-genome sequencing of multiple Arabidopsis thaliana populations

(2011) Jun Cao et al.   NATURE GENETICS

Molecular spandrels: tests of adaptation at the genetic level

(2011) Rowan D. H. Barrett et al.   NATURE REVIEWS GENETICS

Classic Selective Sweeps Were Rare in Recent Human Evolution

(2011) R. D. Hernandez et al.   SCIENCE

Negative Epistasis Between Beneficial Mutations in an Evolving Bacterial Population

(2011) A. I. Khan et al.   SCIENCE

The Shaping of Modern Human Immune Systems by Multiregional Admixture with Archaic Humans

(2011) L. Abi-Rached et al.   SCIENCE

Diminishing Returns Epistasis Among Beneficial Mutations Decelerates Adaptation

(2011) H.-H. Chou et al.   SCIENCE

Weighing the evidence for adaptation at the molecular level

(2011) Justin C. Fay   TRENDS IN GENETICS

Pervasive Adaptive Protein Evolution Apparent in Diversity Patterns around Amino Acid Substitutions in Drosophila simulans

(2011) Shmuel Sattath et al.   PLoS Genetics

Parallel Adaptive Divergence among Geographically Diverse Human Populations

(2011) Jacob A. Tennessen et al.   PLoS Genetics

Common Variants Show Predicted Polygenic Effects on Height in the Tails of the Distribution, Except in Extremely Short Individuals

(2011) Yingleong Chan et al.   PLoS Genetics

Prevalence of Epistasis in the Evolution of Influenza A Surface Proteins

(2011) Sergey Kryazhimskiy et al.   PLoS Genetics

Adaptations to Climate-Mediated Selective Pressures in Humans

(2011) Angela M. Hancock et al.   PLoS Genetics

Meta-analysis of Dense Genecentric Association Studies Reveals Common and Uncommon Variants Associated with Height

(2010) Matthew B. Lanktree et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation

(2010) Jonathan K. Pritchard et al.   CURRENT BIOLOGY

NO EFFECT OF ENVIRONMENTAL HETEROGENEITY ON THE MAINTENANCE OF GENETIC VARIATION IN WING SHAPE IN DROSOPHILA MELANOGASTER

(2010) Sam Yeaman et al.   EVOLUTION

Parallel Adaptation: One or Many Waves of Advance of an Advantageous Allele?

(2010) P. Ralph et al.   GENETICS

Comparative Genomics of the Vertebrate Insulin/TOR Signal Transduction Pathway: A Network-Level Analysis of Selective Pressures

(2010) David Alvarez-Ponce et al.   Genome Biology and Evolution

Effective Population Size and the Efficacy of Selection on the X Chromosomes of Two Closely Related Drosophila Species

(2010) Peter Andolfatto et al.   Genome Biology and Evolution

Natural selection shapes nucleotide polymorphism across the genome of the nematode Caenorhabditis briggsae

(2010) A. D. Cutter et al.   GENOME RESEARCH

De Novo Evolution of Complex, Global and Hierarchical Gene Regulatory Mechanisms

(2010) Dafyd J. Jenkins et al.   JOURNAL OF MOLECULAR EVOLUTION

Trans-acting small RNA determines dominance relationships in Brassica self-incompatibility

(2010) Yoshiaki Tarutani et al.   NATURE

Sequence space and the ongoing expansion of the protein universe

(2010) Inna S. Povolotskaya et al.   NATURE

Genome-wide analysis of a long-term evolution experiment with Drosophila

(2010) Molly K. Burke et al.   NATURE

Genetic architecture of a feeding adaptation: garter snake (Thamnophis) resistance to tetrodotoxin bearing prey

(2010) C. R. Feldman et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Widespread Chromosomal Inversion Polymorphism Contributes to a Major Life-History Transition, Local Adaptation, and Reproductive Isolation

(2010) David B. Lowry et al.   PLOS BIOLOGY

Evidence that Adaptation in Drosophila Is Not Limited by Mutation at Single Sites

(2010) Talia Karasov et al.   PLoS Genetics

Human Population Differentiation Is Strongly Correlated with Local Recombination Rate

(2010) Alon Keinan et al.   PLoS Genetics

Pervasive Cryptic Epistasis in Molecular Evolution

(2010) Mark Lunzer et al.   PLoS Genetics

Spontaneous Mutation Accumulation Studies in Evolutionary Genetics

(2009) Daniel L. Halligan et al.   Annual Review of Ecology Evolution and Systematics

Biased Gene Conversion and the Evolution of Mammalian Genomic Landscapes

(2009) Laurent Duret et al.   Annual Review of Genomics and Human Genetics

DEMOGRAPHIC SOURCE-SINK DYNAMICS RESTRICT LOCAL ADAPTATION IN ELLIOTT'S BLUEBERRY (VACCINIUM ELLIOTTII)

(2009) Jill T. Anderson et al.   EVOLUTION

The Evolution of Control and Distribution of Adaptive Mutations in a Metabolic Pathway

(2009) K. M. Wright et al.   GENETICS

Network-level molecular evolutionary analysis of the insulin/TOR signal transduction pathway across 12 Drosophila genomes

(2009) D. Alvarez-Ponce et al.   GENOME RESEARCH

Experimental evolution reveals natural selection on standing genetic variation

(2009) Henrique Teotónio et al.   NATURE GENETICS

Effective population size and patterns of molecular evolution and variation

(2009) Brian Charlesworth   NATURE REVIEWS GENETICS

From DNA sequence to transcriptional behaviour: a quantitative approach

(2009) Eran Segal et al.   NATURE REVIEWS GENETICS

Evolution of biomolecular networks — lessons from metabolic and protein interactions

(2009) Takuji Yamada et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer

(2009) Y. F. Chan et al.   SCIENCE

Molecular and Evolutionary History of Melanism in North American Gray Wolves

(2009) T. M. Anderson et al.   SCIENCE

Pervasive Natural Selection in the Drosophila Genome?

(2009) Guy Sella et al.   PLoS Genetics

Adaptation to Marginal Habitats

(2008) Tadeusz J. Kawecki   Annual Review of Ecology Evolution and Systematics

Revisiting the Impact of Inversions in Evolution: From Population Genetic Markers to Drivers of Adaptive Shifts and Speciation?

(2008) Ary A. Hoffmann et al.   Annual Review of Ecology Evolution and Systematics

Adaptation from standing genetic variation

(2007) R BARRETT et al.   TRENDS IN ECOLOGY & EVOLUTION