A multiscale statistical mechanical framework integrates biophysical and genomic data to assemble cancer networks

The Increasing Urgency for Standards in Basic Biologic Research

(2014) L. P. Freedman et al.   CANCER RESEARCH

Discovery and saturation analysis of cancer genes across 21 tumour types

(2014) Michael S. Lawrence et al.   NATURE

Molecular physiology of the tensin brotherhood of integrin adaptor proteins

(2014) Donald T. Haynie   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Phosphotyrosine Signaling Proteins that Drive Oncogenesis Tend to be Highly Interconnected

(2013) Grigoriy Koytiger et al.   MOLECULAR & CELLULAR PROTEOMICS

Emerging patterns of somatic mutations in cancer

(2013) Ian R. Watson et al.   NATURE REVIEWS GENETICS

Semi-Supervised Prediction of SH2-Peptide Interactions from Imbalanced High-Throughput Data

(2013) Kousik Kundu et al.   PLoS One

Germinal centre protein HGAL promotes lymphoid hyperplasia and amyloidosis via BCR-mediated Syk activation

(2013) Isabel Romero-Camarero et al.   Nature Communications

Comprehensive identification of mutational cancer driver genes across 12 tumor types

(2013) David Tamborero et al.   Scientific Reports

The SH2 Domain Interaction Landscape

(2013) Michele Tinti et al.   Cell Reports

Structure-based prediction of protein–protein interactions on a genome-wide scale

(2012) Qiangfeng Cliff Zhang et al.   NATURE

TSGene: a web resource for tumor suppressor genes

(2012) Min Zhao et al.   NUCLEIC ACIDS RESEARCH

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

Comprehensive Binary Interaction Mapping of SH2 Domains via Fluorescence Polarization Reveals Novel Functional Diversification of ErbB Receptors

(2012) Ronald J. Hause et al.   PLoS One

High-throughput analysis of peptide-binding modules

(2012) Bernard A. Liu et al.   PROTEOMICS

PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse

(2011) P. V. Hornbeck et al.   NUCLEIC ACIDS RESEARCH

Direct inference of protein-DNA interactions using compressed sensing methods

(2011) M. AlQuraishi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SH2 Domains Recognize Contextual Peptide Sequence Information to Determine Selectivity

(2010) Bernard A. Liu et al.   MOLECULAR & CELLULAR PROTEOMICS

COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer

(2010) S. A. Forbes et al.   NUCLEIC ACIDS RESEARCH

Crk and CrkL adaptor proteins: networks for physiological and pathological signaling

(2009) Raymond B Birge et al.   Cell Communication and Signaling

PhosSNP for Systematic Analysis of Genetic Polymorphisms That Influence Protein Phosphorylation

(2009) Jian Ren et al.   MOLECULAR & CELLULAR PROTEOMICS

Edgetic perturbation models of human inherited disorders

(2009) Quan Zhong et al.   Molecular Systems Biology

Using genome-wide measurements for computational prediction of SH2–peptide interactions

(2009) Zeba Wunderlich et al.   NUCLEIC ACIDS RESEARCH

Prediction of phosphotyrosine signaling networks using a scoring matrix-assisted ligand identification approach

(2008) Lei Li et al.   NUCLEIC ACIDS RESEARCH

Linear Motif Atlas for Phosphorylation-Dependent Signaling

(2008) M. L. Miller et al.   Science Signaling