PseDNA-Pro: DNA-Binding Protein Identification by Combining Chou’s PseAAC and Physicochemical Distance Transformation

Critical assessment of coalescent simulators in modeling recombination hotspots in genomic sequences

(2014) Tao Yang et al.   BMC BIOINFORMATICS

PseAAC-General: Fast Building Various Modes of General Form of Chou’s Pseudo-Amino Acid Composition for Large-Scale Protein Datasets

(2014) Pufeng Du et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

iDNA-Prot|dis: Identifying DNA-Binding Proteins by Incorporating Amino Acid Distance-Pairs and Reduced Alphabet Profile into the General Pseudo Amino Acid Composition

(2014) Bin Liu et al.   PLoS One

iAMP-2L: A two-level multi-label classifier for identifying antimicrobial peptides and their functional types

(2013) Xuan Xiao et al.   ANALYTICAL BIOCHEMISTRY

Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection

(2013) Bin Liu et al.   BIOINFORMATICS

propy: a tool to generate various modes of Chou’s PseAAC

(2013) Dong-Sheng Cao et al.   BIOINFORMATICS

An improved sequence based prediction protocol for DNA-binding proteins using SVM and comprehensive feature analysis

(2013) Chuanxin Zou et al.   BMC BIOINFORMATICS

QChIPat: a quantitative method to identify distinct binding patterns for two biological ChIP-seq samples in different experimental conditions

(2013) Bin Liu et al.   BMC GENOMICS

iCDI-PseFpt: Identify the channel–drug interaction in cellular networking with PseAAC and molecular fingerprints

(2013) Xuan Xiao et al.   JOURNAL OF THEORETICAL BIOLOGY

Predicting anticancer peptides with Chou′s pseudo amino acid composition and investigating their mutagenicity via Ames test

(2013) Zohre Hajisharifi et al.   JOURNAL OF THEORETICAL BIOLOGY

Some remarks on predicting multi-label attributes in molecular biosystems

(2013) Kuo-Chen Chou   Molecular BioSystems

Protein Remote Homology Detection by Combining Chou’s Pseudo Amino Acid Composition and Profile-Based Protein Representation

(2013) Bin Liu et al.   Molecular Informatics

Evaluation of methods for modeling transcription factor sequence specificity

(2013) Matthew T Weirauch et al.   NATURE BIOTECHNOLOGY

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

(2013) Wei Chen et al.   NUCLEIC ACIDS RESEARCH

iSNO-PseAAC: Predict Cysteine S-Nitrosylation Sites in Proteins by Incorporating Position Specific Amino Acid Propensity into Pseudo Amino Acid Composition

(2013) Yan Xu et al.   PLoS One

iSNO-AAPair: incorporating amino acid pairwise coupling into PseAAC for predicting cysteineS-nitrosylation sites in proteins

(2013) Yan Xu et al.   PeerJ

PseAAC-Builder: A cross-platform stand-alone program for generating various special Chou’s pseudo-amino acid compositions

(2012) Pufeng Du et al.   ANALYTICAL BIOCHEMISTRY

DNA-Prot: Identification of DNA Binding Proteins from Protein Sequence Information using Random Forest

(2012) K. Krishna. Kumar et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

DR_bind: a web server for predicting DNA-binding residues from the protein structure based on electrostatics, evolution and geometry

(2012) Yao Chi Chen et al.   NUCLEIC ACIDS RESEARCH

Predicting Anatomical Therapeutic Chemical (ATC) Classification of Drugs by Integrating Chemical-Chemical Interactions and Similarities

(2012) Lei Chen et al.   PLoS One

Using Amino Acid Physicochemical Distance Transformation for Fast Protein Remote Homology Detection

(2012) Bin Liu et al.   PLoS One

iNuc-PhysChem: A Sequence-Based Predictor for Identifying Nucleosomes via Physicochemical Properties

(2012) Wei Chen et al.   PLoS One

Prediction of Apoptosis Protein Locations with Genetic Algorithms and Support Vector Machines Through a New Mode of Pseudo Amino Acid Composition

(2012) Krishna Kumar Kandaswamy et al.   PROTEIN AND PEPTIDE LETTERS

Prediction of Enzyme Subfamily Class via Pseudo Amino Acid Composition by Incorporating the Conjoint Triad Feature

(2012) Yong-Cui Wang et al.   PROTEIN AND PEPTIDE LETTERS

Using Pseudo Amino Acid Composition to Predict Protease Families by Incorporating a Series of Protein Biological Features

(2012) Lele Hu et al.   PROTEIN AND PEPTIDE LETTERS

Identifying Bacterial Virulent Proteins by Fusing a Set of Classifiers Based on Variants of Chou's Pseudo Amino Acid Composition and on Evolutionary Information

(2011) Loris Nanni et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Predicting protein folding rates using the concept of Chou's pseudo amino acid composition

(2011) Jianxiu Guo et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

OligoPred: A web-server for predicting homo-oligomeric proteins by incorporating discrete wavelet transform into Chou's pseudo amino acid composition

(2011) Jian-Ding Qiu et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING

Prediction of GABAA receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine

(2011) Hassan Mohabatkar et al.   JOURNAL OF THEORETICAL BIOLOGY

iLoc-Hum: using the accumulation-label scale to predict subcellular locations of human proteins with both single and multiple sites

(2011) Kuo-Chen Chou et al.   Molecular BioSystems

iLoc-Euk: A Multi-Label Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Eukaryotic Proteins

(2011) Kuo-Chen Chou et al.   PLoS One

iDNA-Prot: Identification of DNA Binding Proteins Using Random Forest with Grey Model

(2011) Wei-Zhong Lin et al.   PLoS One

An Improved Profile-Level Domain Linker Propensity Index for Protein Domain Boundary Prediction.

(2011) Yanfeng Zhang et al.   PROTEIN AND PEPTIDE LETTERS

Identify Golgi Protein Types with Modified Mahalanobis Discriminant Algorithm and Pseudo Amino Acid Composition

(2011) Hui Ding et al.   PROTEIN AND PEPTIDE LETTERS

A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction

(2010) Sitanshu Sekhar Sahu et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Supersecondary structure prediction using Chou's pseudo amino acid composition

(2010) Dongsheng Zou et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

SecretP: Identifying bacterial secreted proteins by fusing new features into Chou’s pseudo-amino acid composition

(2010) Lezheng Yu et al.   JOURNAL OF THEORETICAL BIOLOGY

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues

(2010) Pemra Ozbek et al.   NUCLEIC ACIDS RESEARCH

Using the Concept of Chous Pseudo Amino Acid Composition to Predict Enzyme Family Classes: An Approach with Support Vector Machine Based on Discrete Wavelet Transform

(2010) Jian-Ding Qiu et al.   PROTEIN AND PEPTIDE LETTERS

Prediction of G-Protein-Coupled Receptor Classes in Low Homology Using Chous Pseudo Amino Acid Composition with Approximate Entropy and Hydrophobicity Patterns

(2010) Quan Gu et al.   PROTEIN AND PEPTIDE LETTERS

Prediction of Cyclin Proteins Using Chous Pseudo Amino Acid Composition

(2010) Hassan Mohabatkar   PROTEIN AND PEPTIDE LETTERS

Prediction of Subcellular Localization of Apoptosis Protein Using Chou’s Pseudo Amino Acid Composition

(2009) Hao Lin et al.   ACTA BIOTHEORETICA

Prediction of G-protein-coupled receptor classes based on the concept of Chou’s pseudo amino acid composition: An approach from discrete wavelet transform

(2009) Jian-Ding Qiu et al.   ANALYTICAL BIOCHEMISTRY

Exploiting three kinds of interface propensities to identify protein binding sites

(2009) Bin Liu et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Pseudo Amino Acid Composition and its Applications in Bioinformatics, Proteomics and System Biology

(2009) Kuo-Chen Chou   Current Proteomics

Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach

(2009) Yu-hong Zeng et al.   JOURNAL OF THEORETICAL BIOLOGY

Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses

(2009) Maryam Esmaeili et al.   JOURNAL OF THEORETICAL BIOLOGY

Prediction of Cell Wall Lytic Enzymes Using Chous Amphiphilic Pseudo Amino Acid Composition

(2009) Hui Ding et al.   PROTEIN AND PEPTIDE LETTERS

Prediction of Protein Secondary Structure Content by Using the Concept of Chous Pseudo Amino Acid Composition and Support Vector Machine

(2009) Chao Chen et al.   PROTEIN AND PEPTIDE LETTERS

Using Chou’s pseudo amino acid composition based on approximate entropy and an ensemble of AdaBoost classifiers to predict protein subnuclear location

(2008) Xiaoying Jiang et al.   AMINO ACIDS

Prediction of protein structural classes by Chou’s pseudo amino acid composition: approached using continuous wavelet transform and principal component analysis

(2008) Zhan-Chao Li et al.   AMINO ACIDS

Genetic programming for creating Chou’s pseudo amino acid based features for submitochondria localization

(2008) Loris Nanni et al.   AMINO ACIDS

A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis

(2008) Bin Liu et al.   BMC BIOINFORMATICS

A Novel Computational Approach To Predict Transcription Factor DNA Binding Preference

(2008) Yudong Cai et al.   JOURNAL OF PROTEOME RESEARCH

Predicting the cofactors of oxidoreductases based on amino acid composition distribution and Chou's amphiphilic pseudo-amino acid composition

(2008) Guang-Ya Zhang et al.   JOURNAL OF THEORETICAL BIOLOGY

The modified Mahalanobis Discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition

(2008) Hao Lin   JOURNAL OF THEORETICAL BIOLOGY

Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition

(2008) D.N. Georgiou et al.   JOURNAL OF THEORETICAL BIOLOGY

Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms

(2008) Kuo-Chen Chou et al.   Nature Protocols

DBD-Hunter: a knowledge-based method for the prediction of DNA–protein interactions

(2008) Mu Gao et al.   NUCLEIC ACIDS RESEARCH

Using Chou’s pseudo amino acid composition to predict subcellular localization of apoptosis proteins: An approach with immune genetic algorithm-based ensemble classifier

(2008) Yong-Sheng Ding et al.   PATTERN RECOGNITION LETTERS

Predicting Lipase Types by Improved Chous Pseudo-Amino Acid Composition

(2008) Guang-Ya Zhang et al.   PROTEIN AND PEPTIDE LETTERS

Predicting Subcellular Localization of Mycobacterial Proteins by Using Chous Pseudo Amino Acid Composition

(2008) Hao Lin et al.   PROTEIN AND PEPTIDE LETTERS

Using the Concept of Chous Pseudo Amino Acid Composition to Predict Apoptosis Proteins Subcellular Location: An Approach by Approximate Entropy

(2008) Xiaoying Jian et al.   PROTEIN AND PEPTIDE LETTERS

Predicting Protein Subcellular Location Using Chous Pseudo Amino Acid Composition and Improved Hybrid Approach

(2008) Feng-Min Li et al.   PROTEIN AND PEPTIDE LETTERS