Characterization of the house sparrow (Passer domesticus) transcriptome: a resource for molecular ecology and immunogenetics

High-utility conserved avian microsatellite markers enable parentage and population studies across a wide range of species

(2013) Deborah A Dawson et al.   BMC GENOMICS

Characteristics of MHC Class I Genes in House Sparrows Passer domesticus as Revealed by Long cDNA Transcripts and Amplicon Sequencing

(2013) Maria Karlsson et al.   JOURNAL OF MOLECULAR EVOLUTION

Genomic dissection of variation in clutch size and egg mass in a wild great tit (Parus major) population

(2013) Anna W. Santure et al.   MOLECULAR ECOLOGY

Genetic variation and structure of house sparrow populations: is there an island effect?

(2013) Henrik Jensen et al.   MOLECULAR ECOLOGY

Partitioning of genetic variation across the genome using multimarker methods in a wild bird population

(2013) Matthew R. Robinson et al.   MOLECULAR ECOLOGY

The easy road to genome-wide medium density SNP screening in a non-model species: development and application of a 10 K SNP-chip for the house sparrow (Passer domesticus)

(2013) Ingerid J. Hagen et al.   Molecular Ecology Resources

Ribosomal Protein SA Haploinsufficiency in Humans with Isolated Congenital Asplenia

(2013) A. Bolze et al.   SCIENCE

Cis-regulatory sequence variation and association withMycoplasmaload in natural populations of the house finch (Carpodacus mexicanus)

(2013) Niclas Backström et al.   Ecology and Evolution

Brain transcriptome of the violet-eared waxbill Uraeginthus granatina and recent evolution in the songbird genome

(2013) C. N. Balakrishnan et al.   Open Biology

De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco hyemalis): genomic tools for an ecological model system

(2012) Mark P Peterson et al.   BMC GENOMICS

Comparison between Normalised and Unnormalised 454-Sequencing Libraries for Small-Scale RNA-Seq Studies

(2012) Robert Ekblom et al.   COMPARATIVE AND FUNCTIONAL GENOMICS

Social and genetic benefits of parental investment suggest sex differences in selection pressures

(2012) Julia Schroeder et al.   JOURNAL OF AVIAN BIOLOGY

Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensivein silicoassessment of RNA-seq experiments

(2012) Nagarjun Vijay et al.   MOLECULAR ECOLOGY

Transcriptome-wide polymorphisms of red abalone (Haliotis rufescens) reveal patterns of gene flow and local adaptation

(2012) Pierre De Wit et al.   MOLECULAR ECOLOGY

Microsatellite resources for Passeridae species: a predicted microsatellite map of the house sparrow Passer domesticus

(2012) DEBORAH A. DAWSON et al.   Molecular Ecology Resources

Ensembl 2013

(2012) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

Gene expression divergence and nucleotide differentiation between males of different color morphs and mating strategies in the ruff

(2012) Robert Ekblom et al.   Ecology and Evolution

Transcriptome sequencing of black grouse (Tetrao tetrix) for immune gene discovery and microsatellite development

(2012) B. Wang et al.   Open Biology

Individual Variation in Parental Care Reaction Norms: Integration of Personality and Plasticity

(2011) David F. Westneat et al.   AMERICAN NATURALIST

To pluck or not to pluck: the hidden ethical and scientific costs of relying on feathers as a primary source of DNA

(2011) Paul G. McDonald et al.   JOURNAL OF AVIAN BIOLOGY

Captivity induces hyper-inflammation in the house sparrow (Passer domesticus)

(2011) L. B. Martin et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Hybrid speciation in sparrows I: phenotypic intermediacy, genetic admixture and barriers to gene flow

(2011) JO S. HERMANSEN et al.   MOLECULAR ECOLOGY

Comparison ofFSToutlier tests for SNP loci under selection

(2011) SHAWN R. NARUM et al.   Molecular Ecology Resources

A high-resolution map of human evolutionary constraint using 29 mammals

(2011) Kerstin Lindblad-Toh et al.   NATURE

Rapid evolution of disease resistance is accompanied by functional changes in gene expression in a wild bird

(2011) C. Bonneaud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Variation in MHC genotypes in two populations of house sparrow (Passer domesticus) with different population histories

(2011) Åsa Alexandra Borg et al.   Ecology and Evolution

Gene duplication and fragmentation in the zebra finch major histocompatibility complex

(2010) Christopher N Balakrishnan et al.   BMC BIOLOGY

Digital gene expression analysis of the zebra finch genome

(2010) Robert Ekblom et al.   BMC GENOMICS

Social Status and Circulating Levels of Hormones in Flocks of House Sparrows, Passer domesticus

(2010) Robert E. Hegner et al.   ETHOLOGY

Evolutionary Analysis and Expression Profiling of Zebra Finch Immune Genes

(2010) Robert Ekblom et al.   Genome Biology and Evolution

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

The transcriptomics of sympatric dwarf and normal lake whitefish (Coregonus clupeaformis spp., Salmonidae) divergence as revealed by next-generation sequencing

(2010) JULIE JEUKENS et al.   MOLECULAR ECOLOGY

Genome-wide single nucleotide polymorphisms reveal population history and adaptive divergence in wild guppies

(2010) EVA-MARIA WILLING et al.   MOLECULAR ECOLOGY

A genome-wide set of SNPs detects population substructure and long range linkage disequilibrium in wild sheep

(2010) J.M. MILLER et al.   Molecular Ecology Resources

Application of single nucleotide polymorphisms to non-model species: a technical review

(2010) M. R. GARVIN et al.   Molecular Ecology Resources

The genome of a songbird

(2010) Wesley C. Warren et al.   NATURE

Plasmodium relictum infection and MHC diversity in the house sparrow (Passer domesticus)

(2010) C. Loiseau et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

How pathogens drive genetic diversity: MHC, mechanisms and misunderstandings

(2010) L. G. Spurgin et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Parental provisioning and nestling mortality in house sparrows

(2009) Douglas W. Mock et al.   ANIMAL BEHAVIOUR

From Conservation Genetics to Conservation Genomics

(2009) Craig R. Primmer   Annals of the New York Academy of Sciences

CORNA: testing gene lists for regulation by microRNAs

(2009) X. Wu et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

PanGEA: Identification of allele specific gene expression using the 454 technology

(2009) Robert Kofler et al.   BMC BIOINFORMATICS

Genome variability in European and American bison detected using the BovineSNP50 BeadChip

(2009) Cino Pertoldi et al.   CONSERVATION GENETICS

Diversifying selection on MHC class I in the house sparrow (Passer domesticus)

(2009) CLAIRE LOISEAU et al.   MOLECULAR ECOLOGY

New polymorphic microsatellite loci in the house sparrow,Passer domesticus

(2009) S. GARNIER et al.   Molecular Ecology Resources

New methods to identify conserved microsatellite loci and develop primer sets of high cross-species utility - as demonstrated for birds

(2009) DEBORAH A. DAWSON et al.   Molecular Ecology Resources

Larger groups are more successful in innovative problem solving in house sparrows

(2009) A. Liker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

Natural selection in avian protein-coding genes expressed in brain

(2008) ERIK AXELSSON et al.   MOLECULAR ECOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design

(2007) BRANT C. FAIRCLOTH   Molecular Ecology Resources