Gene expression divergence and nucleotide differentiation between males of different color morphs and mating strategies in the ruff

Development of colour-producing  -keratin nanostructures in avian feather barbs

(2012) R. O Prum et al.   Journal of the Royal Society Interface

Polyamine sensitivity of gap junctions is required for skin pattern formation in zebrafish

(2012) Masakatsu Watanabe et al.   Scientific Reports

Digital gene expression for non-model organisms

(2011) L. Z. Hong et al.   GENOME RESEARCH

Candidate genes for colour and vision exhibit signals of selection across the pied flycatcher (Ficedula hypoleuca) breeding range

(2011) P K Lehtonen et al.   HEREDITY

De novo characterization of the antler tip of Chinese Sika deer transcriptome and analysis of gene expression related to rapid growth

(2011) Baojin Yao et al.   MOLECULAR AND CELLULAR BIOCHEMISTRY

Comparison ofFSToutlier tests for SNP loci under selection

(2011) SHAWN R. NARUM et al.   Molecular Ecology Resources

Morphology and behaviour: functional links in development and evolution

(2011) Rinaldo C. Bertossa   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Rapid evolution of disease resistance is accompanied by functional changes in gene expression in a wild bird

(2011) C. Bonneaud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Digital gene expression analysis of the zebra finch genome

(2010) Robert Ekblom et al.   BMC GENOMICS

DEVELOPMENTAL DECOUPLING OF ALTERNATIVE PHENOTYPES: INSIGHTS FROM THE TRANSCRIPTOMES OF HORN-POLYPHENIC BEETLES

(2010) Emilie C. Snell-Rood et al.   EVOLUTION

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

Using Population Genomics to Detect Selection in Natural Populations: Key Concepts and Methodological Considerations

(2010)   INTERNATIONAL JOURNAL OF PLANT SCIENCES

An EST-based genome scan using 454 sequencing in the marine snail Littorina saxatilis

(2010) J. GALINDO et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The transcriptomics of sympatric dwarf and normal lake whitefish (Coregonus clupeaformis spp., Salmonidae) divergence as revealed by next-generation sequencing

(2010) JULIE JEUKENS et al.   MOLECULAR ECOLOGY

A genetic basis for the phenotypic differentiation between siscowet and lean lake trout (Salvelinus namaycush)

(2010) FREDERICK GOETZ et al.   MOLECULAR ECOLOGY

Colour polymorphism and correlated characters: genetic mechanisms and evolution

(2010) JEFFREY S. MCKINNON et al.   MOLECULAR ECOLOGY

Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow

(2010) JOCHEN B. W. WOLF et al.   MOLECULAR ECOLOGY

The genome of a songbird

(2010) Wesley C. Warren et al.   NATURE

From raw materials to validated system: the construction of a genomic library and microarray to interpret systemic perturbations in Northern bobwhite

(2010) Arun Rawat et al.   PHYSIOLOGICAL GENOMICS

Sequence Polymorphism in Candidate Genes for Differences in Winter Plumage between Scottish and Scandinavian Willow Grouse (Lagopus lagopus)

(2010) Pontus Skoglund et al.   PLoS One

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

Vertebrate pigmentation: from underlying genes to adaptive function

(2010) Joanna K. Hubbard et al.   TRENDS IN GENETICS

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

PanGEA: Identification of allele specific gene expression using the 454 technology

(2009) Robert Kofler et al.   BMC BIOINFORMATICS

The value of avian genomics to the conservation of wildlife

(2009) Michael N Romanov et al.   BMC GENOMICS

Evolution of a Novel Carotenoid-Binding Protein Responsible for Crustacean Shell Color

(2009) N. M. Wade et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular and Evolutionary History of Melanism in North American Gray Wolves

(2009) T. M. Anderson et al.   SCIENCE

LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method

(2008) Tiago Antao et al.   BMC BIOINFORMATICS

Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencing

(2008) Christopher W. Wheat   GENETICA

The Chromosomal Polymorphism Linked to Variation in Social Behavior in the White-Throated Sparrow (Zonotrichia albicollis) Is a Complex Rearrangement and Suppressor of Recombination

(2008) J. W. Thomas et al.   GENETICS

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

Spatial analysis method (sam): a software tool combining molecular and environmental data to identify candidate loci for selection

(2008) STÉPHANE JOOST et al.   Molecular Ecology Resources

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

(2008) Peter A. C. 't Hoen et al.   NUCLEIC ACIDS RESEARCH

A Localized Negative Genetic Correlation Constrains Microevolution of Coat Color in Wild Sheep

(2008) J. Gratten et al.   SCIENCE

msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design

(2007) BRANT C. FAIRCLOTH   Molecular Ecology Resources