Principles of self-organization in biological pathways: a hypothesis on the autogenous association of alpha-synuclein

Ribonucleotide reductase and thymidylate synthase or exogenous deoxyribonucleosides reduce DNA damage and senescence caused by C-MYC depletion

(2016) Sudha Mannava et al.   Aging-US

Intrinsically disordered regions of p53 family are highly diversified in evolution

(2013) Bin Xue et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

The “Observer Effect” in Genome-wide Surveys of Protein-RNA Interactions

(2013) Kasandra J. Riley et al.   MOLECULAR CELL

Properties of native brain α-synuclein

(2013) Jacqueline Burré et al.   NATURE

Activating RNAs associate with Mediator to enhance chromatin architecture and transcription

(2013) Fan Lai et al.   NATURE

Inhibition of TDP-43 Aggregation by Nucleic Acid Binding

(2013) Yi-Chen Huang et al.   PLoS One

Selection of DNA Aptamers That Recognize α-Synuclein Oligomers Using a Competitive Screening Method

(2012) Kaori Tsukakoshi et al.   ANALYTICAL CHEMISTRY

Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins

(2012) Alfredo Castello et al.   CELL

Selective binding of nuclear alpha-synuclein to the PGC1alpha promoter under conditions of oxidative stress may contribute to losses in mitochondrial function: Implications for Parkinson’s disease

(2012) Almas Siddiqui et al.   FREE RADICAL BIOLOGY AND MEDICINE

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

α-Synuclein in Central Nervous System and from Erythrocytes, Mammalian Cells, andEscherichia coliExists Predominantly as Disordered Monomer

(2012) Bruno Fauvet et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

PaxDb, a Database of Protein Abundance Averages Across All Three Domains of Life

(2012) M. Wang et al.   MOLECULAR & CELLULAR PROTEOMICS

Hsp70 Is a Novel Posttranscriptional Regulator of Gene Expression That Binds and Stabilizes Selected mRNAs Containing AU-Rich Elements

(2012) A. Kishor et al.   MOLECULAR AND CELLULAR BIOLOGY

Robustness analysis of cellular systems using the genetic tug-of-war method

(2012) Hisao Moriya et al.   Molecular BioSystems

Modular regulatory principles of large non-coding RNAs

(2012) Mitchell Guttman et al.   NATURE

Sequence signatures of direct complementarity between mRNAs and cognate proteins on multiple levels

(2012) Mario Hlevnjak et al.   NUCLEIC ACIDS RESEARCH

X-inactivation: quantitative predictions of protein interactions in the Xist network

(2012) Federico Agostini et al.   NUCLEIC ACIDS RESEARCH

Neurodegeneration as an RNA disorder

(2012) Rory Johnson et al.   PROGRESS IN NEUROBIOLOGY

Neurodegenerative diseases: Quantitative predictions of protein-RNA interactions

(2012) D. Cirillo et al.   RNA

Predictions of protein-RNA interactions

(2012) Davide Cirillo et al.   Wiley Interdisciplinary Reviews-Computational Molecular Science

Cellular Strategies for Regulating Functional and Nonfunctional Protein Aggregation

(2012) Jörg Gsponer et al.   Cell Reports

DnaK Functions as a Central Hub in the E. coli Chaperone Network

(2012) Giulia Calloni et al.   Cell Reports

Intrinsic Disorder in the Human Spliceosomal Proteome

(2012) Iga Korneta et al.   PLoS Computational Biology

Hsp90 Interacts Specifically with Viral RNA and Differentially Regulates Replication Initiation of Bamboo mosaic virus and Associated Satellite RNA

(2012) Ying Wen Huang et al.   PLoS Pathogens

Recent Advances in the Genetics of Parkinson's Disease

(2011) Ian Martin et al.   Annual Review of Genomics and Human Genetics

On the aggregation properties of FMRP - a link with the FXTAS syndrome?

(2011) Ljiljana Sjekloća et al.   FEBS Journal

Shuttling SR proteins: more than splicing factors

(2011) Laure Twyffels et al.   FEBS Journal

Conserved, Disordered C Terminus of DnaK Enhances Cellular Survival upon Stress and DnaKin VitroChaperone Activity

(2011) Robert G. Smock et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

TDP-43 Autoregulation: Implications for Disease

(2011) Mauricio Budini et al.   JOURNAL OF MOLECULAR NEUROSCIENCE

Local RNA Translation at the Synapse and in Disease

(2011) L. Liu-Yesucevitz et al.   JOURNAL OF NEUROSCIENCE

Metastability of Native Proteins and the Phenomenon of Amyloid Formation

(2011) Andrew J. Baldwin et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A High-Confidence Human Plasma Proteome Reference Set with Estimated Concentrations in PeptideAtlas

(2011) Terry Farrah et al.   MOLECULAR & CELLULAR PROTEOMICS

Parkinson's disease and α-synuclein expression

(2011) Michael J. Devine et al.   MOVEMENT DISORDERS

Gain of function of mutant p53 by coaggregation with multiple tumor suppressors

(2011) Jie Xu et al.   Nature Chemical Biology

Predicting protein associations with long noncoding RNAs

(2011) Matteo Bellucci et al.   NATURE METHODS

Reorganizing the protein space at the Universal Protein Resource (UniProt)

(2011)   NUCLEIC ACIDS RESEARCH

Improving RNA-Seq expression estimates by correcting for fragment bias

(2011) Adam Roberts et al.   GENOME BIOLOGY

Aberrant RNA processing events in neurological disorders

(2010) Karen Anthony et al.   BRAIN RESEARCH

TDP-43 regulates its mRNA levels through a negative feedback loop

(2010) Youhna M Ayala et al.   EMBO JOURNAL

Selective Translational Control of the Alzheimer Amyloid Precursor Protein Transcript by Iron Regulatory Protein-1

(2010) Hyun-Hee Cho et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Reactome: a database of reactions, pathways and biological processes

(2010) D. Croft et al.   NUCLEIC ACIDS RESEARCH

RNA-mediated chaperone type for de novo protein folding

(2010) Seong Il Choi et al.   RNA Biology

 -Synuclein Promotes SNARE-Complex Assembly in Vivo and in Vitro

(2010) J. Burre et al.   SCIENCE

Cognate DNA Stabilizes the Tumor Suppressor p53 and Prevents Misfolding and Aggregation

(2009) Daniella Ishimaru et al.   BIOCHEMISTRY

Intrinsic Protein Disorder and Interaction Promiscuity Are Widely Associated with Dosage Sensitivity

(2009) Tanya Vavouri et al.   CELL

RNA and Disease

(2009) Thomas A. Cooper et al.   CELL

Antagonistic factors control the unproductive splicing of SC35 terminal intron

(2009) Natacha Dreumont et al.   NUCLEIC ACIDS RESEARCH

Tied Up in Loops: Positive and Negative Autoregulation of p53

(2009) X. Lu   Cold Spring Harbor Perspectives in Biology

The cytoplasmic C2A domain of synaptotagmin shows sequence specific interaction with its own mRNA

(2008) Sunitha S. Sukumaran et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Structured non-coding RNAs and the RNP Renaissance

(2008) J Robert Hogg et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Janus chaperones: Assistance of both RNA- and protein-folding by ribosomal proteins

(2008) Denes Kovacs et al.   FEBS LETTERS

PID: the Pathway Interaction Database

(2008) Carl F. Schaefer et al.   NUCLEIC ACIDS RESEARCH