Constitutive patterns of gene expression regulated by RNA-binding proteins

catRAPID omics: a web server for large-scale prediction of protein-RNA interactions

(2013) F. Agostini et al.   BIOINFORMATICS

HOXA9 Gene Expression in Acute Myeloid Leukemia

(2013) De-Peng Li et al.   CELL BIOCHEMISTRY AND BIOPHYSICS

Variation and genetic control of protein abundance in humans

(2013) Linfeng Wu et al.   NATURE

Principles of self-organization in biological pathways: a hypothesis on the autogenous association of alpha-synuclein

(2013) Andreas Zanzoni et al.   NUCLEIC ACIDS RESEARCH

Identification of LIN28B-bound mRNAs reveals features of target recognition and regulation

(2013) Robin Graf et al.   RNA Biology

Identification of mRNAs bound and regulated by human LIN28 proteins and molecular requirements for RNA recognition

(2013) M. Hafner et al.   RNA

Finding the target sites of RNA-binding proteins

(2013) Xiao Li et al.   Wiley Interdisciplinary Reviews-RNA

General RBP expression in human tissues as a function of age

(2012) Kiyoshi Masuda et al.   AGEING RESEARCH REVIEWS

Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins

(2012) Alfredo Castello et al.   CELL

Alternatively spliced protein arginine methyltransferase 1 isoform PRMT1v2 promotes the survival and invasiveness of breast cancer cells

(2012) R. Mitchell Baldwin et al.   CELL CYCLE

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts

(2012) Alexander G. Baltz et al.   MOLECULAR CELL

X-inactivation: quantitative predictions of protein interactions in the Xist network

(2012) Federico Agostini et al.   NUCLEIC ACIDS RESEARCH

Characterization of Novel Paternal ncRNAs at the Plagl1 Locus, Including Hymai, Predicted to Interact with Regulators of Active Chromatin

(2012) Isabel Iglesias-Platas et al.   PLoS One

Neurodegeneration as an RNA disorder

(2012) Rory Johnson et al.   PROGRESS IN NEUROBIOLOGY

Neurodegenerative diseases: Quantitative predictions of protein-RNA interactions

(2012) D. Cirillo et al.   RNA

Evolutionary Dynamics of Gene and Isoform Regulation in Mammalian Tissues

(2012) J. Merkin et al.   SCIENCE

Cellular Strategies for Regulating Functional and Nonfunctional Protein Aggregation

(2012) Jörg Gsponer et al.   Cell Reports

The KRAB-ZFP/KAP1 System Contributes to the Early Embryonic Establishment of Site-Specific DNA Methylation Patterns Maintained during Development

(2012) Simon Quenneville et al.   Cell Reports

Amyloid-like Aggregates Sequester Numerous Metastable Proteins with Essential Cellular Functions

(2011) Heidi Olzscha et al.   CELL

Intrinsically disordered proteins: regulation and disease

(2011) M Madan Babu et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Identification and characterization of novel spliced variants of PRMT2 in breast carcinoma

(2011) Jing Zhong et al.   FEBS Journal

2D-DIGE analysis of ovarian cancer cell responses to cytotoxic gold compounds

(2011) Francesca Guidi et al.   Molecular BioSystems

Transcriptome-wide Analysis of Regulatory Interactions of the RNA-Binding Protein HuR

(2011) Svetlana Lebedeva et al.   MOLECULAR CELL

The evolution of gene expression levels in mammalian organs

(2011) David Brawand et al.   NATURE

Predicting protein associations with long noncoding RNAs

(2011) Matteo Bellucci et al.   NATURE METHODS

Reactivation of embryonic nodal signaling is associated with tumor progression and promotes the growth of prostate cancer cells

(2011) Mitchell G. Lawrence et al.   PROSTATE

Bone morphogenetic protein and growth differentiation factor cytokine families and their protein antagonists

(2010) Christopher C. Rider et al.   BIOCHEMICAL JOURNAL

Genomic expression and single-nucleotide polymorphism profiling discriminates chromophobe renal cell carcinoma and oncocytoma

(2010) Min-Han Tan et al.   BMC CANCER

Oncogenic Potential of Retinoic Acid Receptor-  in Hepatocellular Carcinoma

(2010) T.-D. Yan et al.   CANCER RESEARCH

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

(2010) Timothy Ravasi et al.   CELL

The YTH Domain Is a Novel RNA Binding Domain

(2010) Zhaiyi Zhang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Towards a knowledge-based Human Protein Atlas

(2010) Mathias Uhlen et al.   NATURE BIOTECHNOLOGY

RBPDB: a database of RNA-binding specificities

(2010) K. B. Cook et al.   NUCLEIC ACIDS RESEARCH

iCLIP Predicts the Dual Splicing Effects of TIA-RNA Interactions

(2010) Zhen Wang et al.   PLOS BIOLOGY

Predicting neuroendocrine tumor (carcinoid) neoplasia using gene expression profiling and supervised machine learning

(2009) Ignat Drozdov et al.   CANCER

Comparison of Human and Rat Uterine Leiomyomata: Identification of a Dysregulated Mammalian Target of Rapamycin Pathway

(2009) J. S. Crabtree et al.   CANCER RESEARCH

Intrinsic Protein Disorder and Interaction Promiscuity Are Widely Associated with Dosage Sensitivity

(2009) Tanya Vavouri et al.   CELL

The Spliceosome: Design Principles of a Dynamic RNP Machine

(2009) Markus C. Wahl et al.   CELL

Correlation of mRNA and protein in complex biological samples

(2009) Tobias Maier et al.   FEBS LETTERS

A Relationship between mRNA Expression Levels and Protein Solubility in E. coli

(2009) Gian Gaetano Tartaglia et al.   JOURNAL OF MOLECULAR BIOLOGY

Correlation between mRNA expression levels and protein aggregation propensities in subcellular localisations

(2009) Gian Gaetano Tartaglia et al.   Molecular BioSystems

The Histone Demethylases JMJD1A and JMJD2B Are Transcriptional Targets of Hypoxia-inducible Factor HIF

(2008) Sophie Beyer et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression

(2008) H. Parkinson et al.   NUCLEIC ACIDS RESEARCH

Diverse RNA-Binding Proteins Interact with Functionally Related Sets of RNAs, Suggesting an Extensive Regulatory System

(2008) Daniel J Hogan et al.   PLOS BIOLOGY