Efficient identification of Y chromosome sequences in the human andDrosophilagenomes

Genomics and Genetics of Human and Primate Y Chromosomes

(2012) Jennifer F. Hughes et al.   Annual Review of Genomics and Human Genetics

Identification of avian W-linked contigs by short-read sequencing

(2012) Nancy Chen et al.   BMC GENOMICS

Evolution of Human-Specific Neural SRGAP2 Genes by Incomplete Segmental Duplication

(2012) Megan Y. Dennis et al.   CELL

Foreword: sex and sex chromosomes—new clues from nonmodel species

(2012) Tariq Ezaz et al.   CHROMOSOME RESEARCH

Mapping the pericentric heterochromatin by comparative genomic hybridization analysis and chromosome deletions in Drosophila melanogaster

(2012) B. He et al.   GENOME RESEARCH

Sex-Specific Adaptation Drives Early Sex Chromosome Evolution in Drosophila

(2012) Q. Zhou et al.   SCIENCE

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

BamTools: a C++ API and toolkit for analyzing and managing BAM files

(2011) D. W. Barnett et al.   BIOINFORMATICS

Evolutionary history of novel genes on the tammar wallaby Y chromosome: Implications for sex chromosome evolution

(2011) V. J. Murtagh et al.   GENOME RESEARCH

GAGE: A critical evaluation of genome assemblies and assembly algorithms

(2011) S. L. Salzberg et al.   GENOME RESEARCH

FlyBase 101 - the basics of navigating FlyBase

(2011) P. McQuilton et al.   NUCLEIC ACIDS RESEARCH

Evolution of Sex Chromosomes in Insects

(2010) Vera B. Kaiser et al.   Annual Review of Genetics

Simple Y-Autosomal Incompatibilities Cause Hybrid Male Sterility in Reciprocal Crosses Between Drosophila virilis and D. americana

(2010) A. L. Sweigart   GENETICS

A map of human genome variation from population-scale sequencing

(2010) Richard M. Durbin et al.   NATURE

Limitations of next-generation genome sequence assembly

(2010) Can Alkan et al.   NATURE METHODS

Comparative Genomic Hybridization (CGH) Reveals a Neo-X Chromosome and Biased Gene Movement in Stalk-Eyed Flies (Genus Teleopsis)

(2010) Richard H. Baker et al.   PLoS Genetics

Phenotypic connections in surprising places

(2010) Bolan Linghu et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Functional Copies of the Mst77F Gene on the Y Chromosome of Drosophila melanogaster

(2009) F. J. Krsticevic et al.   GENETICS

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Origin and evolution of Y chromosomes: Drosophila tales

(2009) A. Bernardo Carvalho et al.   TRENDS IN GENETICS

Two New Y-Linked Genes in Drosophila melanogaster

(2008) M. D. Vibranovski et al.   GENETICS

Low conservation of gene content in the Drosophila Y chromosome

(2008) Leonardo B. Koerich et al.   NATURE

Mapping and sequencing of structural variation from eight human genomes

(2008) Jeffrey M. Kidd et al.   NATURE

Polymorphic Y Chromosomes Harbor Cryptic Variation with Manifold Functional Consequences

(2008) B. Lemos et al.   SCIENCE