The Adaptation of Temperate Bacteriophages to Their Host Genomes

Structure and size determination of bacteriophage P2 and P4 procapsids: Function of size responsiveness mutations

(2012) Altaira D. Dearborn et al.   JOURNAL OF STRUCTURAL BIOLOGY

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium

(2012) C. Kroger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome Engineering in Vibrio cholerae: A Feasible Approach to Address Biological Issues

(2012) Marie-Eve Val et al.   PLoS Genetics

Genetic Background and Mobility of Variants of the GenenleAin Attaching and Effacing Escherichia coli

(2011) Kristina Creuzburg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli

(2011) Atsuko Shinhara et al.   BMC GENOMICS

The terminal region of the E. coli chromosome localises at the periphery of the nucleoid

(2011) Jean-Christophe Meile et al.   BMC MICROBIOLOGY

Genome-wide detection of novel regulatory RNAs in E. coli

(2011) R. Raghavan et al.   GENOME RESEARCH

The good viruses: viral mutualistic symbioses

(2011) Marilyn J. Roossinck   NATURE REVIEWS MICROBIOLOGY

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

Alternative mechanism for bacteriophage adsorption to the motile bacterium Caulobacter crescentus

(2011) R. C. Guerrero-Ferreira et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

(2010) Alexis Criscuolo et al.   BMC EVOLUTIONARY BIOLOGY

Dichotomy in the evolution of pathogenicity island and bacteriophage encoded integrases from pathogenic Escherichia coli strains

(2010) Michael G. Napolitano et al.   INFECTION GENETICS AND EVOLUTION

Gene clusters reflecting macrodomain structure respond to nucleoid perturbations

(2010) Vittore F. Scolari et al.   Molecular BioSystems

Viruses in the faecal microbiota of monozygotic twins and their mothers

(2010) Alejandro Reyes et al.   NATURE

The population genetics of commensal Escherichia coli

(2010) Olivier Tenaillon et al.   NATURE REVIEWS MICROBIOLOGY

Bacteriophage resistance mechanisms

(2010) Simon J. Labrie et al.   NATURE REVIEWS MICROBIOLOGY

DNA motifs that sculpt the bacterial chromosome

(2010) Fabrice Touzain et al.   NATURE REVIEWS MICROBIOLOGY

N15: The linear phage–plasmid

(2010) Nikolai V. Ravin   PLASMID

The Small, Slow and Specialized CRISPR and Anti-CRISPR of Escherichia and Salmonella

(2010) Marie Touchon et al.   PLoS One

Strong intranucleoid interactions organize the Escherichia coli chromosome into a nucleoid filament

(2010) P. A. Wiggins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Classification of Myoviridae bacteriophages using protein sequence similarity

(2009) Rob Lavigne et al.   BMC MICROBIOLOGY

Regulatory RNAs in Bacteria

(2009) Lauren S. Waters et al.   CELL

Termination Structures in the Escherichia coli Chromosome Replication Fork Trap

(2009) Iain G. Duggin et al.   JOURNAL OF MOLECULAR BIOLOGY

Bacterial Toxin–Antitoxin Systems: More Than Selfish Entities?

(2009) Laurence Van Melderen et al.   PLoS Genetics

Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

(2009) Marie Touchon et al.   PLoS Genetics

The Defective Prophage Pool of Escherichia coli O157: Prophage–Prophage Interactions Potentiate Horizontal Transfer of Virulence Determinants

(2009) Md Asadulghani et al.   PLoS Pathogens

The Organization of the Bacterial Genome

(2008) Eduardo P.C. Rocha   Annual Review of Genetics

Genotypic and Phenotypic Diversity among Induced, stx2-Carrying Bacteriophages from Environmental Escherichia coli Strains

(2008) C. Garcia-Aljaro et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prophinder: a computational tool for prophage prediction in prokaryotic genomes

(2008) Gipsi Lima-Mendez et al.   BIOINFORMATICS

The MatP/matS Site-Specific System Organizes the Terminus Region of the E. coli Chromosome into a Macrodomain

(2008) Romain Mercier et al.   CELL

The elusive object of desire—Interactions of bacteriophages and their hosts

(2008) Sergei Nechaev et al.   CURRENT OPINION IN MICROBIOLOGY

Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa

(2008) C. Winstanley et al.   GENOME RESEARCH

Insertion Hot Spot for Horizontally Acquired DNA within a Bidirectional Small-RNA Locus in Salmonella enterica

(2008) R. Balbontin et al.   JOURNAL OF BACTERIOLOGY

Reticulate Representation of Evolutionary and Functional Relationships between Phage Genomes

(2008) G. Lima-Mendez et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bacteriophage infection is targeted to cellular poles

(2008) Rotem Edgar et al.   MOLECULAR MICROBIOLOGY

sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes

(2008) Hsi-Yuan Huang et al.   NUCLEIC ACIDS RESEARCH

The Vienna RNA Websuite

(2008) A. R. Gruber et al.   NUCLEIC ACIDS RESEARCH

Determination of cell fate selection during phage lambda infection

(2008) F. St-Pierre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Viral diversity and dynamics in an infant gut

(2008) Mya Breitbart et al.   RESEARCH IN MICROBIOLOGY

Escherichia coli and its chromosome

(2008) Rodrigo Reyes-Lamothe et al.   TRENDS IN MICROBIOLOGY