Stable Isotope Metabolic Labeling-based Quantitative Phosphoproteomic Analysis of Arabidopsis Mutants Reveals Ethylene-regulated Time-dependent Phosphoproteins and Putative Substrates of Constitutive Triple Response 1 Kinase

Mass spectrometry-based proteomics: existing capabilities and future directions

(2012) Thomas E. Angel et al.   CHEMICAL SOCIETY REVIEWS

Phosphoproteomics ofArabidopsischloroplasts reveals involvement of the STN7 kinase in phosphorylation of nucleoid protein pTAC16

(2012) Björn Ingelsson et al.   FEBS LETTERS

Absolute Quantitation of Isoforms of Post-translationally Modified Proteins in Transgenic Organism

(2012) Yaojun Li et al.   MOLECULAR & CELLULAR PROTEOMICS

Phosphoproteome Dynamics Upon Changes in Plant Water Status Reveal Early Events Associated With Rapid Growth Adjustment in Maize Leaves

(2012) Ludovic Bonhomme et al.   MOLECULAR & CELLULAR PROTEOMICS

Auxin regulates aquaporin function to facilitate lateral root emergence

(2012) Benjamin Péret et al.   NATURE CELL BIOLOGY

Functional Phosphoproteomic Analysis Reveals That a Serine-62-Phosphorylated Isoform of Ethylene Response Factor110 Is Involved in Arabidopsis Bolting

(2012) L. Zhu et al.   PLANT PHYSIOLOGY

FLOWERING BHLH transcriptional activators control expression of the photoperiodic flowering regulator CONSTANS in Arabidopsis

(2012) S. Ito et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CTR1 phosphorylates the central regulator EIN2 to control ethylene hormone signaling from the ER membrane to the nucleus in Arabidopsis

(2012) C. Ju et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural Probing of a Protein Phosphatase 2A Network by Chemical Cross-Linking and Mass Spectrometry

(2012) F. Herzog et al.   SCIENCE

Processing and Subcellular Trafficking of ER-Tethered EIN2 Control Response to Ethylene Gas

(2012) H. Qiao et al.   SCIENCE

Motif-All: discovering all phosphorylation motifs

(2011) Zengyou He et al.   BMC BIOINFORMATICS

Light-harvesting chlorophyll a/b-binding proteins are required for stomatal response to abscisic acid in Arabidopsis

(2011) Yan-Hong Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Paradigms and Paradox in the Ethylene Signaling Pathway and Interaction Network

(2011) Qiong Zhao et al.   Molecular Plant

Relative and accurate measurement of protein abundance using 15N stable isotope labeling in Arabidopsis (SILIA)

(2011) Guangyu Guo et al.   PHYTOCHEMISTRY

Phosphoproteomic Analysis Identifies Grb10 as an mTORC1 Substrate That Negatively Regulates Insulin Signaling

(2011) Y. Yu et al.   SCIENCE

Signaling Role of Fructose Mediated by FINS1/FBP in Arabidopsis thaliana

(2011) Young-Hee Cho et al.   PLoS Genetics

Protein Quantitation Using Isotope-Assisted Mass Spectrometry

(2010) Kelli G. Kline et al.   Annual Review of Biophysics

Quantitation in Mass-Spectrometry-Based Proteomics

(2010) Waltraud X. Schulze et al.   Annual Review of Plant Biology

Systems-wide proteomic characterization of combinatorial post-translational modification patterns

(2010) Nicolas L Young et al.   Expert Review of Proteomics

Options and considerations when selecting a quantitative proteomics strategy

(2010) Bruno Domon et al.   NATURE BIOTECHNOLOGY

Ethylene-Induced Stabilization of ETHYLENE INSENSITIVE3 and EIN3-LIKE1 Is Mediated by Proteasomal Degradation of EIN3 Binding F-Box 1 and 2 That Requires EIN2 in Arabidopsis

(2010) F. An et al.   PLANT CELL

In planta changes in protein phosphorylation induced by the plant hormone abscisic acid

(2010) K. G. Kline et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of the plant plasma membrane H+-ATPase by its C-terminal domain: what do we know for sure?

(2009) Corinna Speth et al.   EUROPEAN JOURNAL OF CELL BIOLOGY

Interplay between ethylene, ETP1/ETP2 F-box proteins, and degradation of EIN2 triggers ethylene responses in Arabidopsis

(2009) H. Qiao et al.   GENES & DEVELOPMENT

A Combinatorial Interplay Among the 1-Aminocyclopropane-1-Carboxylate Isoforms Regulates Ethylene Biosynthesis in Arabidopsis thaliana

(2009) A. Tsuchisaka et al.   GENETICS

Recent advances in ethylene research

(2009) Z. Lin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparison of Novel Decoy Database Designs for Optimizing Protein Identification Searches Using ABRF sPRG2006 Standard MS/MS Data Sets

(2009) Luca Bianco et al.   JOURNAL OF PROTEOME RESEARCH

The IntAct molecular interaction database in 2010

(2009) B. Aranda et al.   NUCLEIC ACIDS RESEARCH

Low Glucose Uncouples Hexokinase1-Dependent Sugar Signaling from Stress and Defense Hormone Abscisic Acid and C2H4 Responses in Arabidopsis

(2009) Y.-H. Cho et al.   PLANT PHYSIOLOGY

Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer

(2009) Hao Li et al.   PROTEOMICS

Ethylene signaling: new levels of complexity and regulation

(2008) Mandy D Kendrick et al.   CURRENT OPINION IN PLANT BIOLOGY

A Hierarchical Algorithm for Calculating the Isotopic Fine Structures of Molecules

(2008) L LI et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

GPS 2.0, a Tool to Predict Kinase-specific Phosphorylation Sites in Hierarchy

(2008) Yu Xue et al.   MOLECULAR & CELLULAR PROTEOMICS

Multiple Phosphorylations in the C-terminal Tail of Plant Plasma Membrane Aquaporins

(2008) Sodana Prak et al.   MOLECULAR & CELLULAR PROTEOMICS

Dual control of nuclear EIN3 by bifurcate MAPK cascades in C2H4 signalling

(2008) Sang-Dong Yoo et al.   NATURE

STRING 8--a global view on proteins and their functional interactions in 630 organisms

(2008) L. J. Jensen et al.   NUCLEIC ACIDS RESEARCH

The plant plasma membrane proton pump ATPase: a highly regulated P-type ATPase with multiple physiological roles

(2008) Geoffrey Duby et al.   PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY

The dual-and-opposing-effect of ethylene on the negative gravitropism of Arabidopsis inflorescence stem and light-grown hypocotyls

(2008) Ning Li   PLANT SCIENCE

The ethylene receptors: Complex perception for a simple gas

(2008) Brad M. Binder   PLANT SCIENCE

What’s Driving False Discovery Rates?

(2007) David L. Tabb   JOURNAL OF PROTEOME RESEARCH

False Discovery Rates and Related Statistical Concepts in Mass Spectrometry-Based Proteomics

(2007) Hyungwon Choi et al.   JOURNAL OF PROTEOME RESEARCH