Mass spectrometry-based proteomics: existing capabilities and future directions
Published 2012 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Mass spectrometry-based proteomics: existing capabilities and future directions
Authors
Keywords
-
Journal
CHEMICAL SOCIETY REVIEWS
Volume 41, Issue 10, Pages 3912
Publisher
Royal Society of Chemistry (RSC)
Online
2012-04-13
DOI
10.1039/c2cs15331a
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- On the Scalability and Requirements of Whole Protein Mass Spectrometry
- (2011) Philip D. Compton et al. ANALYTICAL CHEMISTRY
- Liquid Chromatography-Mass Spectrometry-based Quantitative Proteomics
- (2011) Fang Xie et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Selected reaction monitoring applied to proteomics
- (2011) Sebastien Gallien et al. JOURNAL OF MASS SPECTROMETRY
- Effectiveness of CID, HCD, and ETD with FT MS/MS for Degradomic-Peptidomic Analysis: Comparison of Peptide Identification Methods
- (2011) Yufeng Shen et al. JOURNAL OF PROTEOME RESEARCH
- Improving Liquid Chromatography-Mass Spectrometry Sensitivity Using a Subambient Pressure Ionization with Nanoelectrospray (SPIN) Interface
- (2011) Keqi Tang et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- Target-Decoy Approach and False Discovery Rate: When Things May Go Wrong
- (2011) Nitin Gupta et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- 18O-Labeled Proteome Reference as Global Internal Standards for Targeted Quantification by Selected Reaction Monitoring-Mass Spectrometry
- (2011) Jong-Seo Kim et al. MOLECULAR & CELLULAR PROTEOMICS
- Deep and Highly Sensitive Proteome Coverage by LC-MS/MS Without Prefractionation
- (2011) Suman S. Thakur et al. MOLECULAR & CELLULAR PROTEOMICS
- Reversed-phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells
- (2011) Yuexi Wang et al. PROTEOMICS
- Development of Mass Spectrometry-Based Shotgun Method for Proteome Analysis of 500 to 5000 Cancer Cells
- (2010) Nan Wang et al. ANALYTICAL CHEMISTRY
- Achieving 50% Ionization Efficiency in Subambient Pressure Ionization with Nanoelectrospray
- (2010) Ioan Marginean et al. ANALYTICAL CHEMISTRY
- Integrated Microfluidic Device for Automated Single Cell Analysis Using Electrophoretic Separation and Electrospray Ionization Mass Spectrometry
- (2010) J. Scott Mellors et al. ANALYTICAL CHEMISTRY
- Rapid Identification of Protein Biomarkers ofEscherichia coliO157:H7 by Matrix-Assisted Laser Desorption Ionization-Time-of-Flight−Time-of-Flight Mass Spectrometry and Top-Down Proteomics
- (2010) Clifton K. Fagerquist et al. ANALYTICAL CHEMISTRY
- Machine learning based prediction for peptide drift times in ion mobility spectrometry
- (2010) Anuj R. Shah et al. BIOINFORMATICS
- The significance, development and progress of high-throughput combinatorial histone code analysis
- (2010) Nicolas L. Young et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Regulation of the p53 pathway by ubiquitin and related proteins
- (2010) Andreas Hock et al. INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY
- Nuclear protein isoforms: Implications for cancer diagnosis and therapy
- (2010) Fei Shen et al. JOURNAL OF CELLULAR BIOCHEMISTRY
- Plasma Proteome Response to Severe Burn Injury Revealed by18O-Labeled “Universal” Reference-Based Quantitative Proteomics
- (2010) Wei-Jun Qian et al. JOURNAL OF PROTEOME RESEARCH
- On the Development of Plasma Protein Biomarkers
- (2010) Silvia Surinova et al. JOURNAL OF PROTEOME RESEARCH
- A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics
- (2010) Alexey I. Nesvizhskii Journal of Proteomics
- Discovery of Mouse Spleen Signaling Responses to Anthrax using Label-Free Quantitative Phosphoproteomics via Mass Spectrometry
- (2010) Nathan P. Manes et al. MOLECULAR & CELLULAR PROTEOMICS
- Pressurized Pepsin Digestion in Proteomics
- (2010) Daniel López-Ferrer et al. MOLECULAR & CELLULAR PROTEOMICS
- Enhanced Sensitivity for Selected Reaction Monitoring Mass Spectrometry-based Targeted Proteomics Using a Dual Stage Electrodynamic Ion Funnel Interface
- (2010) Mahmud Hossain et al. MOLECULAR & CELLULAR PROTEOMICS
- Multiplex N-terminome Analysis of MMP-2 and MMP-9 Substrate Degradomes by iTRAQ-TAILS Quantitative Proteomics
- (2010) Anna Prudova et al. MOLECULAR & CELLULAR PROTEOMICS
- Measurement of single-cell dynamics
- (2010) David G. Spiller et al. NATURE
- A systematic approach to protein glycosylation analysis: a path through the maze
- (2010) Karina Mariño et al. Nature Chemical Biology
- Super-SILAC mix for quantitative proteomics of human tumor tissue
- (2010) Tamar Geiger et al. NATURE METHODS
- Decoding signalling networks by mass spectrometry-based proteomics
- (2010) Chunaram Choudhary et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Establishing the Proteome of Normal Human Cerebrospinal Fluid
- (2010) Steven E. Schutzer et al. PLoS One
- Blood Peptidome-Degradome Profile of Breast Cancer
- (2010) Yufeng Shen et al. PLoS One
- Two-dimensional liquid chromatography system for online top-down mass spectrometry
- (2010) Zhixin Tian et al. PROTEOMICS
- Droplets for Ultrasmall-Volume Analysis
- (2009) Daniel T. Chiu et al. ANALYTICAL CHEMISTRY
- Dilution-Free Analysis from Picoliter Droplets by Nano-Electrospray Ionization Mass Spectrometry
- (2009) Ryan T. Kelly et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Proteomics by Mass Spectrometry: Approaches, Advances, and Applications
- (2009) John R. Yates et al. Annual Review of Biomedical Engineering
- Full Dynamic Range Proteome Analysis of S. cerevisiae by Targeted Proteomics
- (2009) Paola Picotti et al. CELL
- The Clinical Plasma Proteome: A Survey of Clinical Assays for Proteins in Plasma and Serum
- (2009) N. L. Anderson CLINICAL CHEMISTRY
- Filaggrin in the frontline: role in skin barrier function and disease
- (2009) A. Sandilands et al. JOURNAL OF CELL SCIENCE
- Mouse-Specific Tandem IgY7-SuperMix Immunoaffinity Separations for Improved LC-MS/MS Coverage of the Plasma Proteome
- (2009) Jian-Ying Zhou et al. JOURNAL OF PROTEOME RESEARCH
- An Integrated Top-Down and Bottom-Up Strategy for Broadly Characterizing Protein Isoforms and Modifications
- (2009) Si Wu et al. JOURNAL OF PROTEOME RESEARCH
- An LC-IMS-MS Platform Providing Increased Dynamic Range for High-Throughput Proteomic Studies
- (2009) Erin Shammel Baker et al. JOURNAL OF PROTEOME RESEARCH
- Precursor ion independent algorithm for top-down shotgun proteomics
- (2009) Yihsuan S. Tsai et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- DtaRefinery, a Software Tool for Elimination of Systematic Errors from Parent Ion Mass Measurements in Tandem Mass Spectra Data Sets
- (2009) Vladislav A. Petyuk et al. MOLECULAR & CELLULAR PROTEOMICS
- An Automated and Multiplexed Method for High Throughput Peptide Immunoaffinity Enrichment and Multiple Reaction Monitoring Mass Spectrometry-based Quantification of Protein Biomarkers
- (2009) Jeffrey R. Whiteaker et al. MOLECULAR & CELLULAR PROTEOMICS
- A Dual Pressure Linear Ion Trap Orbitrap Instrument with Very High Sequencing Speed
- (2009) Jesper V. Olsen et al. MOLECULAR & CELLULAR PROTEOMICS
- High-throughput generation of selected reaction-monitoring assays for proteins and proteomes
- (2009) Paola Picotti et al. NATURE METHODS
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- Enrichment and analysis of phosphopeptides under different experimental conditions using titanium dioxide affinity chromatography and mass spectrometry
- (2009) Uma K. Aryal et al. RAPID COMMUNICATIONS IN MASS SPECTROMETRY
- Dynamically Multiplexed Ion Mobility Time-of-Flight Mass Spectrometry
- (2008) Mikhail E. Belov et al. ANALYTICAL CHEMISTRY
- Elastomeric Microchip Electrospray Emitter for Stable Cone-Jet Mode Operation in the Nanoflow Regime
- (2008) Ryan T. Kelly et al. ANALYTICAL CHEMISTRY
- Interpreting Top-Down Mass Spectra Using Spectral Alignment
- (2008) Ari M. Frank et al. ANALYTICAL CHEMISTRY
- FT-ICR MS optimization for the analysis of intact proteins
- (2008) Aleksey V. Tolmachev et al. INTERNATIONAL JOURNAL OF MASS SPECTROMETRY
- Spectral Probabilities and Generating Functions of Tandem Mass Spectra: A Strike against Decoy Databases
- (2008) Sangtae Kim et al. JOURNAL OF PROTEOME RESEARCH
- Large-Scale Multiplexed Quantitative Discovery Proteomics Enabled by the Use of an18O-Labeled “Universal” Reference Sample
- (2008) Wei-Jun Qian et al. JOURNAL OF PROTEOME RESEARCH
- Metadegradomics
- (2008) Alain Doucet et al. MOLECULAR & CELLULAR PROTEOMICS
- Challenges for the 'chemical-systems' biologist
- (2008) Gabriel M Simon et al. Nature Chemical Biology
- Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry
- (2008) Michael L Nielsen et al. NATURE METHODS
- STRING 8--a global view on proteins and their functional interactions in 630 organisms
- (2008) L. J. Jensen et al. NUCLEIC ACIDS RESEARCH
- Integrated microfluidic bioprocessor for single-cell gene expression analysis
- (2008) N. M. Toriello et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Fully Automated Four-Column Capillary LC−MS System for Maximizing Throughput in Proteomic Analyses
- (2007) Eric A. Livesay et al. ANALYTICAL CHEMISTRY
- A microfluidic processor for gene expression profiling of single human embryonic stem cells
- (2007) Jiang F. Zhong et al. LAB ON A CHIP
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started