Comparative Genomics of Nitrogen Cycling Pathways in Bacteria and Archaea

A genomic perspective on stoichiometric regulation of soil carbon cycling

(2017) Wyatt H Hartman et al.   ISME Journal

A communal catalogue reveals Earth’s multiscale microbial diversity

(2017) Luke R. Thompson et al.   NATURE

Metagenomic reconstruction of nitrogen cycling pathways in a CO 2 -enriched grassland ecosystem

(2017) Qichao Tu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microdiversity of an Abundant Terrestrial Bacterium Encompasses Extensive Variation in Ecologically Relevant Traits

(2017) Alexander B. Chase et al.   mBio

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Global biogeography of microbial nitrogen-cycling traits in soil

(2016) Michaeline B. Nelson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

(2016) Karthik Anantharaman et al.   Nature Communications

Microbial community responses to soil tillage and crop rotation in a corn/soybean agroecosystem

(2016) Chris R. Smith et al.   Ecology and Evolution

A new view of the tree of life

(2016) Laura A. Hug et al.   Nature Microbiology

Nitrogen Cycling Potential of a Grassland Litter Microbial Community

(2015) Michaeline B. Nelson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data: Fig. 1.

(2015) Kathrin P. Aßhauer et al.   BIOINFORMATICS

Forest harvesting reduces the soil metagenomic potential for biomass decomposition

(2015) Erick Cardenas et al.   ISME Journal

Complete nitrification by a single microorganism

(2015) Maartje A. H. J. van Kessel et al.   NATURE

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Correction for Zelezniak et al., Metabolic dependencies drive species co-occurrence in diverse microbial communities

(2015)   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Networks of energetic and metabolic interactions define dynamics in microbial communities

(2015) Mallory Embree et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biogeography and biophysicochemical traits link N2O emissions, N2O emission potential and microbial communities across New Zealand pasture soils

(2015) Sergio E. Morales et al.   SOIL BIOLOGY & BIOCHEMISTRY

Genomic Potential for Polysaccharide Deconstruction in Bacteria

(2014) Renaud Berlemont et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill

(2014) Olivia U Mason et al.   ISME Journal

Relationships between protein-encoding gene abundance and corresponding process are commonly assumed yet rarely observed

(2014) Jennifer D Rocca et al.   ISME Journal

Ecological Perspectives on Microbes Involved in N-Cycling

(2014) Kazuo Isobe et al.   MICROBES AND ENVIRONMENTS

Effect of soil moisture status and a nitrification inhibitor, dicyandiamide, on ammonia oxidizer and denitrifier growth and nitrous oxide emissions in a grassland soil

(2014) Hong J. Di et al.   SOIL BIOLOGY & BIOCHEMISTRY

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

IMG 4 version of the integrated microbial genomes comparative analysis system

(2013) Victor M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes

(2012) Patricia C Dos Santos et al.   BMC GENOMICS

Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils

(2012) R. A. Sanford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PhymmBL expanded: confidence scores, custom databases, parallelization and more

(2011) Arthur Brady et al.   NATURE METHODS

Bacterial gene abundances as indicators of greenhouse gas emission in soils

(2010) Sergio E Morales et al.   ISME Journal

Pathways of nitrogen utilization by soil microorganisms – A review

(2010) Daniel Geisseler et al.   SOIL BIOLOGY & BIOCHEMISTRY

Horizontal gene transfer in evolution: facts and challenges

(2009) L. Boto   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Nitrogen additions and microbial biomass: a meta-analysis of ecosystem studies

(2008) Kathleen K. Treseder   ECOLOGY LETTERS

Transformation of the Nitrogen Cycle: Recent Trends, Questions, and Potential Solutions

(2008) J. N. Galloway et al.   SCIENCE

Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli

(2008) Morgan N Price et al.   GENOME BIOLOGY