Bacterial adaptation to life in association with plants - A proteomic perspective from culture to in situ conditions

Playing the “Harp”: Evolution of Our Understanding ofhrp/hrcGenes

(2010) Anastasia P. Tampakaki et al.   Annual Review of Phytopathology

Characterization of the NifA-RpoN Regulon in Rhizobium etli in Free Life and in Symbiosis with Phaseolus vulgaris

(2010) E. Salazar et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacteria causing important diseases of citrus utilise distinct modes of pathogenesis to attack a common host

(2010) Adrián Alberto Vojnov et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The Sinorhizobium meliloti RNA chaperone Hfq influences central carbon metabolism and the symbiotic interaction with alfalfa

(2010) Omar Torres-Quesada et al.   BMC MICROBIOLOGY

Type VI Secretion: Not Just for Pathogenesis Anymore

(2010) Andrea J. Jani et al.   Cell Host & Microbe

Role of spectral counting in quantitative proteomics

(2010) Deborah H Lundgren et al.   Expert Review of Proteomics

Proteomic Alterations Explain Phenotypic Changes in Sinorhizobium meliloti Lacking the RNA Chaperone Hfq

(2010) L. Barra-Bily et al.   JOURNAL OF BACTERIOLOGY

Protein- versus peptide fractionation in the first dimension of two-dimensional high-performance liquid chromatography-matrix-assisted laser desorption/ionization tandem mass spectrometry for qualitative proteome analysis of tissue samples

(2010) Katja Melchior et al.   JOURNAL OF CHROMATOGRAPHY A

Chemical proteomic and bioinformatic strategies for the identification and quantification of vascular antigens in cancer

(2010) Verena Strassberger et al.   Journal of Proteomics

Two-dimensional gel electrophoresis in proteomics: Past, present and future

(2010) Thierry Rabilloud et al.   Journal of Proteomics

Proteomic analysis of the regulatory function of DSF-dependent quorum sensing in Xanthomonas oryzae pv. oryzicola

(2010) Yancun Zhao et al.   MICROBIAL PATHOGENESIS

The twin arginine protein transport pathway exports multiple virulence proteins in the plant pathogen Streptomyces scabies

(2010) Madhumita V. Joshi et al.   MOLECULAR MICROBIOLOGY

Tubules and donuts: a type VI secretion story

(2010) Gabriele Bönemann et al.   MOLECULAR MICROBIOLOGY

Combination of Fluorescent Reporters for Simultaneous Monitoring of Root Colonization and Antifungal Gene Expression by a Biocontrol Pseudomonad on Cereals with Flow Cytometry

(2010) Laurène Rochat et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Rhizobial Adaptation to Hosts, a New Facet in the Legume Root-Nodule Symbiosis

(2010) Marion Koch et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Mass Spectrometric Analysis Reveals Remnants of Host–Pathogen Molecular Interactions at the Starch Granule Surface in Wheat Endosperm

(2010) Michael L. Wall et al.   PHYTOPATHOLOGY

Proteome of the phytopathogen Xanthomonas citri subsp. citri: a global expression profile

(2010) Márcia R Soares et al.   Proteome Science

The extracellular proteome of Rhizobium etli CE3 in exponential and stationary growth phase

(2010) Niurka Meneses et al.   Proteome Science

Highlights on the capacities of "Gel-based" proteomics

(2010) François Chevalier   Proteome Science

Phyloproteomic classification of unsequenced organisms by top-down identification of bacterial proteins using capLC-MS/MS on an Orbitrap

(2010) Colin Wynne et al.   PROTEOMICS

An integrated proteomics and transcriptomics reference data set provides new insights into the Bradyrhizobium japonicum bacteroid metabolism in soybean root nodules

(2010) Nathanaël Delmotte et al.   PROTEOMICS

Differential protein profiles ofBradyrhizobium japonicumUSDA110 bacteroid during soybean nodule development

(2010) Mika Nomura et al.   SOIL SCIENCE AND PLANT NUTRITION

Pathogenesis, parasitism and mutualism in the trophic space of microbe–plant interactions

(2010) Adrian C. Newton et al.   TRENDS IN MICROBIOLOGY

Diminished Exoproteome of Frankia spp. in Culture and Symbiosis

(2009) J. E. Mastronunzio et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of bacterial protein markers and enolase as a plant response protein in the infection of Olea europaea subsp. europaea by Pseudomonas savastanoi pv. savastanoi

(2009) Alexandre Campos et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Genetic organization and functional analysis of the type III secretion system ofBradyrhizobium elkanii

(2009) Shin Okazaki et al.   FEMS MICROBIOLOGY LETTERS

Comparative proteome analysis ofXanthomonas campestrispv.campestrisin the interaction with the susceptible and the resistant cultivars ofBrassica oleracea

(2009) Gabriela R. Villeth et al.   FEMS MICROBIOLOGY LETTERS

Transcriptomic Analysis of Rhizobium leguminosarum Biovar viciae in Symbiosis with Host Plants Pisum sativum and Vicia cracca

(2009) R. Karunakaran et al.   JOURNAL OF BACTERIOLOGY

Repeatability of peptide identifications in shotgun proteome analysis employing off-line two-dimensional chromatographic separations and ion-trap MS

(2009) Nathanaël Delmotte et al.   JOURNAL OF SEPARATION SCIENCE

Integrating multiple 'omics' analysis for microbial biology: application and methodologies

(2009) W. Zhang et al.   MICROBIOLOGY-SGM

Applying mass spectrometry-based proteomics to genetics, genomics and network biology

(2009) Matthias Gstaiger et al.   NATURE REVIEWS GENETICS

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Functional analysis of natural microbial consortia using community proteomics

(2009) Nathan C. VerBerkmoes et al.   NATURE REVIEWS MICROBIOLOGY

Sigma factor mimicry involved in regulation of general stress response

(2009) A. Francez-Charlot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Community proteogenomics reveals insights into the physiology of phyllosphere bacteria

(2009) N. Delmotte et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteomic characterization of apilRregulatory mutant ofAzoarcussp. strain BH72 with the aid of gel-based and gel-free approaches

(2009) Lena Hauberg et al.   PROTEOMICS

Environmental proteomics: Analysis of structure and function of microbial communities

(2009) Thomas Schneider et al.   PROTEOMICS

Wild nodules can be broken: proteomics of Frankia in field-collected root nodules

(2009) Juliana E. Mastronunzio et al.   SYMBIOSIS

Establishing nitrogen-fixing symbiosis with legumes: how many rhizobium recipes?

(2009) Catherine Masson-Boivin et al.   TRENDS IN MICROBIOLOGY

A 2D reversed-phase × ion-pair reversed-phase HPLC-MALDI TOF/TOF-MS approach for shotgun proteome analysis

(2008) Maria Lasaosa et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

An Orphan LuxR Homolog of Sinorhizobium meliloti Affects Stress Adaptation and Competition for Nodulation

(2008) A. V. Patankar et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A two-genome microarray for the rice pathogens Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola and its use in the discovery of a difference in their regulation of hrp genes

(2008) Young-Su Seo et al.   BMC MICROBIOLOGY

Analysis of outer membrane vesicle associated proteins isolated from the plant pathogenic bacterium Xanthomonas campestris pv. campestris

(2008) Vishaldeep K Sidhu et al.   BMC MICROBIOLOGY

Type VI secretion: a beginner's guide

(2008) Lewis EH Bingle et al.   CURRENT OPINION IN MICROBIOLOGY

Roles of reactive oxygen species in interactions between plants and pathogens

(2008) Nandini P. Shetty et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

In vivo proteome analysis of Xanthomonas campestris pv. campestris in the interaction with the host plant Brassica oleracea

(2008) Aretusa E. Andrade et al.   FEMS MICROBIOLOGY LETTERS

Effect of awaaLmutation on lipopolysaccharide composition, oxidative stress survival, and virulence inErwinia amylovora

(2008) Matthew C. Berry et al.   FEMS MICROBIOLOGY LETTERS

Gram-negative outer membrane vesicles: beyond the cell surface

(2008) L MASHBURN-WARREN et al.   Geobiology

Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea

(2008) Sarah M Sowell et al.   ISME Journal

Secretome Analysis Uncovers an Hcp-Family Protein Secreted via a Type VI Secretion System in Agrobacterium tumefaciens

(2008) H.-Y. Wu et al.   JOURNAL OF BACTERIOLOGY

Root-Microbe Communication through Protein Secretion

(2008) Clelia De-la-Peña et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

DsbA Plays a Critical and Multifaceted Role in the Production of Secreted Virulence Factors by the PhytopathogenErwinia carotovorasubsp. atroseptica

(2008) Sarah J. Coulthurst et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Analysis of the secretome of the soybean symbiont Bradyrhizobium japonicum

(2008) Jana Hempel et al.   JOURNAL OF BIOTECHNOLOGY

Low molecular weight plant extract induces metabolic changes and the secretion of extracellular enzymes, but has a negative effect on the expression of the type-III secretion system in Xanthomonas campestris pv. campestris

(2008) Tony Francis Watt et al.   JOURNAL OF BIOTECHNOLOGY

A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data

(2008) Anke Becker et al.   JOURNAL OF BIOTECHNOLOGY

HrpG regulates type II secretory proteins in Xanthomonas axonopodis pv. citri

(2008) Akihiro Yamazaki et al.   JOURNAL OF GENERAL PLANT PATHOLOGY

Comparative proteomic studies of root–microbe interactions

(2008) Ulrike Mathesius   Journal of Proteomics

Effect of potato suberin onStreptomyces scabiesproteome

(2008) ANNIE LAUZIER et al.   MOLECULAR PLANT PATHOLOGY

TwoXanthomonasExtracellular Polygalacturonases, PghAxc and PghBxc, Are Regulated by Type III Secretion Regulators HrpX and HrpG and Are Required for Virulence

(2008) Lifeng Wang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Comprehensive proteomics of Methylobacterium extorquens AM1 metabolism under single carbon and nonmethylotrophic conditions

(2008) Gundula Bosch et al.   PROTEOMICS

A quorum-quenching approach to identify quorum-sensing-regulated functions in Azospirillum lipoferum

(2008) Mickaël Boyer et al.   RESEARCH IN MICROBIOLOGY

Proteomic analysis of the cyanobacterium of the Azolla symbiosis: identity, adaptation, and NifH modification

(2007) M. Ekman et al.   JOURNAL OF EXPERIMENTAL BOTANY

Proteomic analysis of the proteins regulated by HrpB from the plant pathogenic bacteriumBurkholderia glumae

(2007) Yongsung Kang et al.   PROTEOMICS