Serial sequencing of isolength RAD tags for cost-efficient genome-wide profiling of genetic and epigenetic variations

Host adaptation and unexpected symbiont partners enable reef-building corals to tolerate extreme temperatures

(2016) Emily J. Howells et al.   GLOBAL CHANGE BIOLOGY

Methodological assessment of 2b-RAD genotyping technique for population structure inferences in yellowfin tuna ( Thunnus albacares )

(2016) Carlo Pecoraro et al.   Marine Genomics

New view of population genetics of zooplankton: RAD-seq analysis reveals population structure of the North Atlantic planktonic copepod Centropages typicus

(2016) L. Blanco-Bercial et al.   MOLECULAR ECOLOGY

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

Quantitative trait loci associated with natural diversity in water-use efficiency and response to soil drying in Brachypodium distachyon

(2016) David L. Des Marais et al.   PLANT SCIENCE

Evolutionary origins of germline segregation in Metazoa: evidence for a germ stem cell lineage in the coralOrbicella faveolata(Cnidaria, Anthozoa)

(2016) Sarah Barfield et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evaluation of the 2b-RAD method for genomic selection in scallop breeding

(2016) Jinzhuang Dou et al.   Scientific Reports

A high-density genetic map and growth related QTL mapping in bighead carp (Hypophthalmichthys nobilis)

(2016) Beide Fu et al.   Scientific Reports

High-density linkage mapping aided by transcriptomics documents ZW sex determination system in the Chinese mitten crab Eriocheir sinensis

(2015) Z Cui et al.   HEREDITY

Extending RAD tag analysis to microbial ecology: a comparison between MultiLocus Sequence Typing and 2b-RAD to investigateListeria monocytogenesgenetic structure

(2015) Marianna Pauletto et al.   Molecular Ecology Resources

Impacts of degraded DNA on restriction enzyme associated DNA sequencing (RADSeq)

(2015) Carly F. Graham et al.   Molecular Ecology Resources

Genomic determinants of coral heat tolerance across latitudes

(2015) G. B. Dixon et al.   SCIENCE

MethylRAD: a simple and scalable method for genome-wide DNA methylation profiling using methylation-dependent restriction enzymes

(2015) Shi Wang et al.   Open Biology

Demystifying the RAD fad

(2014) Jonathan B. Puritz et al.   MOLECULAR ECOLOGY

dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms

(2014) Jonathan B. Puritz et al.   PeerJ

High-Resolution Linkage and Quantitative Trait Locus Mapping Aided by Genome Survey Sequencing: Building Up An Integrative Genomic Framework for a Bivalve Mollusc

(2013) W. Jiao et al.   DNA RESEARCH

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

RADtyping: An Integrated Package for Accurate De Novo Codominant and Dominant RAD Genotyping in Mapping Populations

(2013) Xiaoteng Fu et al.   PLoS One

Whole genome phylogeny for 21Drosophilaspecies using predicted 2b-RAD fragments

(2013) Arun S. Seetharam et al.   PeerJ

Reference-free SNP calling: improved accuracy by preventing incorrect calls from repetitive genomic regions

(2012) Jinzhuang Dou et al.   Biology Direct

The effect of strand bias in Illumina short-read sequencing data

(2012) Yan Guo et al.   BMC GENOMICS

2b-RAD: a simple and flexible method for genome-wide genotyping

(2012) Shi Wang et al.   NATURE METHODS

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

The MspJI family of modification-dependent restriction endonucleases for epigenetic studies

(2011) D. Cohen-Karni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA