Coupling enrichment methods with proteomics for understanding and treating disease
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Coupling enrichment methods with proteomics for understanding and treating disease
Authors
Keywords
-
Journal
Proteomics Clinical Applications
Volume 9, Issue 1-2, Pages 33-47
Publisher
Wiley
Online
2014-12-19
DOI
10.1002/prca.201400097
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- In-depth proteomic analyses of ovarian cancer cell line exosomes reveals differential enrichment of functional categories compared to the NCI 60 proteome
- (2014) Ankit Sinha et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- Inferring alterations in cell-to-cell communication in HER2+ breast cancer using secretome profiling of three cell models
- (2014) David J. Klinke et al. BIOTECHNOLOGY AND BIOENGINEERING
- Characterization of the membrane proteome and N-glycoproteome in BV-2 mouse microglia by liquid chromatography-tandem mass spectrometry
- (2014) Dohyun Han et al. BMC GENOMICS
- Data integration in the era of omics: current and future challenges
- (2014) David Gomez-Cabrero et al. BMC Systems Biology
- Mass spectrometry-based membrane proteomics in cancer biomarker discovery
- (2014) George Mermelekas et al. EXPERT REVIEW OF MOLECULAR DIAGNOSTICS
- The proteomics of prostate cancer exosomes
- (2014) Richard R Drake et al. Expert Review of Proteomics
- Exosomal Proteins in the Aqueous Humor as Novel Biomarkers in Patients with Neovascular Age-related Macular Degeneration
- (2014) Gum-Yong Kang et al. JOURNAL OF PROTEOME RESEARCH
- Quantitative proteomic analysis of hepatocyte-secreted extracellular vesicles reveals candidate markers for liver toxicity
- (2014) Eva Rodríguez-Suárez et al. Journal of Proteomics
- Proteomic analysis of cerebrospinal fluid extracellular vesicles: A comprehensive dataset
- (2014) Davide Chiasserini et al. Journal of Proteomics
- Bladder Cancer Exosomes Contain EDIL-3/Del1 and Facilitate Cancer Progression
- (2014) Carla J. Beckham et al. JOURNAL OF UROLOGY
- Glycoproteomic Analysis of Prostate Cancer Tissues by SWATH Mass Spectrometry Discovers N-acylethanolamine Acid Amidase and Protein Tyrosine Kinase 7 as Signatures for Tumor Aggressiveness
- (2014) Yansheng Liu et al. MOLECULAR & CELLULAR PROTEOMICS
- Proteomics Analysis of Cancer Exosomes Using a Novel Modified Aptamer-based Array (SOMAscanTM) Platform
- (2014) Jason Webber et al. MOLECULAR & CELLULAR PROTEOMICS
- Phosphorylation of Mutant Huntingtin at Serine 116 Modulates Neuronal Toxicity
- (2014) Erin E. Watkin et al. PLoS One
- Proteomic Analysis of Saliva in HIV-Positive Heroin Addicts Reveals Proteins Correlated with Cognition
- (2014) Stephen S. Dominy et al. PLoS One
- Absence of Metalloprotease GP63 Alters the Protein Content of Leishmania Exosomes
- (2014) Kasra Hassani et al. PLoS One
- The Use of Nanotrap Particles Technology in Capturing HIV-1 Virions and Viral Proteins from Infected Cells
- (2014) Elizabeth Jaworski et al. PLoS One
- The overexpression of a single oncogene (ERBB2/HER2) alters the proteomic landscape of extracellular vesicles
- (2014) Maria Amorim et al. PROTEOMICS
- Proteomic analysis of hypoxia-induced U373MG glioma secretome reveals novel hypoxia-dependent migration factors
- (2014) Jong Hyuk Yoon et al. PROTEOMICS
- Cardiac extracellular proteome profiling and membrane topology analysis using glycoproteomics
- (2014) Yuan Tian et al. Proteomics Clinical Applications
- Identification of salivary N-glycoproteins and measurement of glycosylation site occupancy by boronate glycoprotein enrichment and liquid chromatography/electrospray ionization tandem mass spectrometry
- (2014) Ying Xu et al. RAPID COMMUNICATIONS IN MASS SPECTROMETRY
- Mass spectrometric protein maps for biomarker discovery and clinical research
- (2013) Yansheng Liu et al. EXPERT REVIEW OF MOLECULAR DIAGNOSTICS
- The Plasma Proteome Identifies Expected and Novel Proteins Correlated with Micronutrient Status in Undernourished Nepalese Children
- (2013) Robert N. Cole et al. JOURNAL OF NUTRITION
- Enrichment of Plasma Membrane Proteins Using Nanoparticle Pellicles: Comparison between Silica and Higher Density Nanoparticles
- (2013) Waeowalee Choksawangkarn et al. JOURNAL OF PROTEOME RESEARCH
- Exosomes from Myeloid-Derived Suppressor Cells Carry Biologically Active Proteins
- (2013) Meghan Burke et al. JOURNAL OF PROTEOME RESEARCH
- N-Glycoprotein SRMAtlas
- (2013) Ruth Hüttenhain et al. MOLECULAR & CELLULAR PROTEOMICS
- Plasma Membrane Proteomics of Tumor Spheres Identify CD166 as a Novel Marker for Cancer Stem-like Cells in Head and Neck Squamous Cell Carcinoma
- (2013) Ming Yan et al. MOLECULAR & CELLULAR PROTEOMICS
- Urinary exosomes and diabetic nephropathy: a proteomic approach
- (2013) F. Raimondo et al. Molecular BioSystems
- Differential protein profiling of renal cell carcinoma urinary exosomes
- (2013) F. Raimondo et al. Molecular BioSystems
- Integrated genomic characterization of endometrial carcinoma
- (2013) Gad Getz et al. NATURE
- Data, information, knowledge and principle: back to metabolism in KEGG
- (2013) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- MicroRNA and Protein Profiling of Brain Metastasis Competent Cell-Derived Exosomes
- (2013) Laura Camacho et al. PLoS One
- Proteome Profiling of Neuroblastoma-Derived Exosomes Reveal the Expression of Proteins Potentially Involved in Tumor Progression
- (2013) Danilo Marimpietri et al. PLoS One
- Unexpected gain of function for the scaffolding protein plectin due to mislocalization in pancreatic cancer
- (2013) S. J. Shin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Molecular deconvolution of the monoclonal antibodies that comprise the polyclonal serum response
- (2013) Y. Wine et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Exosomes reflect the hypoxic status of glioma cells and mediate hypoxia-dependent activation of vascular cells during tumor development
- (2013) P. Kucharzewska et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Identification and characterization of proteins isolated from microvesicles derived from human lung cancer pleural effusions
- (2013) Jung Ok Park et al. PROTEOMICS
- Extracellular vesicles as prospective carriers of oncogenic protein signatures in adult and paediatric brain tumours
- (2013) Delphine Garnier et al. PROTEOMICS
- Proteome profiling of exosomes derived from human primary and metastatic colorectal cancer cells reveal differential expression of key metastatic factors and signal transduction components
- (2013) Hong Ji et al. PROTEOMICS
- A fast and reproducible method for albumin isolation and depletion from serum and cerebrospinal fluid
- (2013) Ronald J. Holewinski et al. PROTEOMICS
- Identification, prioritization, and evaluation of glycoproteins for aggressive prostate cancer using quantitative glycoproteomics and antibody-based assays on tissue specimens
- (2013) Jing Chen et al. PROTEOMICS
- Quantitative measurements ofN-linked glycoproteins in human plasma by SWATH-MS
- (2013) Yansheng Liu et al. PROTEOMICS
- Quantitative proteomics of fractionated membrane and lumen exosome proteins from isogenic metastatic and nonmetastatic bladder cancer cells reveal differential expression of EMT factors
- (2013) Dennis Kjølhede Jeppesen et al. PROTEOMICS
- Current challenges in software solutions for mass spectrometry-based quantitative proteomics
- (2012) Salvatore Cappadona et al. AMINO ACIDS
- Glycomics, glycoproteomics and the immune system
- (2012) Daniel Kolarich et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Glycoproteomics enabled by tagging sialic acid- or galactose-terminated glycans
- (2012) T. N. C. Ramya et al. GLYCOBIOLOGY
- Melanoma cell-derived exosomes alter macrophage and dendritic cell functions in vitro
- (2012) Annamaria Marton et al. IMMUNOLOGY LETTERS
- Plasma membrane proteomics identifies bone marrow stromal antigen 2 as a potential therapeutic target in endometrial cancer
- (2012) Takuhei Yokoyama et al. INTERNATIONAL JOURNAL OF CANCER
- Statistical Inference from Multiple iTRAQ Experiments without Using Common Reference Standards
- (2012) Shelley M. Herbrich et al. JOURNAL OF PROTEOME RESEARCH
- Discovery of serum proteomic biomarkers for prediction of response to infliximab (a monoclonal anti-TNF antibody) treatment in rheumatoid arthritis: An exploratory analysis
- (2012) Ignacio Ortea et al. Journal of Proteomics
- Identification and proteomic profiling of exosomes in human cerebrospinal fluid
- (2012) Jonathan M Street et al. Journal of Translational Medicine
- TSLP Signaling Network Revealed by SILAC-Based Phosphoproteomics
- (2012) Jun Zhong et al. MOLECULAR & CELLULAR PROTEOMICS
- Metabolic Flux Increases Glycoprotein Sialylation: Implications for Cell Adhesion and Cancer Metastasis
- (2012) Ruben T. Almaraz et al. MOLECULAR & CELLULAR PROTEOMICS
- Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis
- (2012) Ludovic C. Gillet et al. MOLECULAR & CELLULAR PROTEOMICS
- A proteomics approach for the identification and cloning of monoclonal antibodies from serum
- (2012) Wan Cheung Cheung et al. NATURE BIOTECHNOLOGY
- A placental sub-proteome: The apical plasma membrane of the syncytiotrophoblast
- (2012) D.D. Vandré et al. PLACENTA
- A new method for quantitative analysis of cell surface glycoproteome
- (2012) Zhen Sun et al. PROTEOMICS
- Characterization of disease-associatedN-linked glycoproteins
- (2012) Yuan Tian et al. PROTEOMICS
- Analysis of a membrane-enriched proteome from postmortem human brain tissue in Alzheimer's disease
- (2012) Laura E. Donovan et al. Proteomics Clinical Applications
- Application of glycoproteomics for the discovery of biomarkers in lung cancer
- (2012) Qing Kay Li et al. Proteomics Clinical Applications
- SILAC-based quantitative proteomic analysis of gastric cancer secretome
- (2012) Arivusudar Marimuthu et al. Proteomics Clinical Applications
- Exosomes: Vehicles for the Transfer of Toxic Proteins Associated with Neurodegenerative Diseases?
- (2012) Shayne A. Bellingham et al. Frontiers in Physiology
- Proteomic analysis of cancer stem cells in human prostate cancer cells
- (2011) Eun-Kyung Lee et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- Discovery of cellular substrates for protein kinase A using a peptide array screening protocol
- (2011) F. Donelson Smith et al. BIOCHEMICAL JOURNAL
- GlycoFly: A Database ofDrosophila N-linked Glycoproteins Identified Using SPEG–MS Techniques
- (2011) Deniz Baycin-Hizal et al. JOURNAL OF PROTEOME RESEARCH
- The Human Proteome Project: Current State and Future Direction
- (2011) Pierre Legrain et al. MOLECULAR & CELLULAR PROTEOMICS
- Protein profiling of microdomains purified from renal cell carcinoma and normal kidney tissue samples
- (2011) F. Raimondo et al. Molecular BioSystems
- Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis
- (2011) Renu Goel et al. Molecular BioSystems
- Microvesicles secreted by macrophages shuttle invasion-potentiating microRNAs into breast cancer cells
- (2011) Mei Yang et al. Molecular Cancer
- A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study
- (2011) Stefan P Albaum et al. Proteome Science
- The cardiokine story unfolds: ischemic stress-induced protein secretion in the heart
- (2011) Shirin Doroudgar et al. TRENDS IN MOLECULAR MEDICINE
- Temporal Profiling of the Secretome during Adipogenesis in Humans
- (2010) Jun Zhong et al. JOURNAL OF PROTEOME RESEARCH
- TagRecon: High-Throughput Mutation Identification through Sequence Tagging
- (2010) Surendra Dasari et al. JOURNAL OF PROTEOME RESEARCH
- Quantitative Phosphoproteomic Analysis of T Cell Receptor Signaling in Diabetes Prone and Resistant Mice
- (2010) Leo K. Iwai et al. JOURNAL OF PROTEOME RESEARCH
- Feasibility of Large-Scale Phosphoproteomics with Higher Energy Collisional Dissociation Fragmentation
- (2010) Nagarjuna Nagaraj et al. JOURNAL OF PROTEOME RESEARCH
- Conditioned media from cell lines: A complementary model to clinical specimens for the discovery of disease-specific biomarkers
- (2010) Paul Dowling et al. PROTEOMICS
- Advances in membranous vesicle and exosome proteomics improving biological understanding and biomarker discovery
- (2010) Francesca Raimondo et al. PROTEOMICS
- Reducing agent-mediated precipitation of high-abundance plasma proteins
- (2009) Scott E. Warder et al. ANALYTICAL BIOCHEMISTRY
- Identification of tyrosine-phosphorylated proteins associated with metastasis and functional analysis of FER in human hepatocellular carcinoma cells
- (2009) Haiyu Li et al. BMC CANCER
- Phosphoproteomic Analysis of Human Embryonic Stem Cells
- (2009) Laurence M. Brill et al. Cell Stem Cell
- Exosomes: proteomic insights and diagnostic potential
- (2009) Richard J Simpson et al. Expert Review of Proteomics
- Quantitative cell signalling analysis reveals down-regulation of MAPK pathway activation in colorectal cancer
- (2009) Christian Gulmann et al. JOURNAL OF PATHOLOGY
- Mislocalized Activation of Oncogenic RTKs Switches Downstream Signaling Outcomes
- (2009) Chunaram Choudhary et al. MOLECULAR CELL
- Up-regulated Proteins in the Fluid Bathing the Tumour Cell Microenvironment as Potential Serological Markers for Early Detection of Cancer of the Breast
- (2009) Pavel Gromov et al. Molecular Oncology
- Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins
- (2009) Bernd Wollscheid et al. NATURE BIOTECHNOLOGY
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- Identifying Drug Effects via Pathway Alterations using an Integer Linear Programming Optimization Formulation on Phosphoproteomic Data
- (2009) Alexander Mitsos et al. PLoS Computational Biology
- Evaluation of two cell surface modification methods for proteomic analysis of plasma membrane from isolated mouse hepatocytes
- (2008) Xuanwen Li et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- LKB1 Is Necessary for Akt-Mediated Phosphorylation of Proapoptotic Proteins
- (2008) D. Zhong et al. CANCER RESEARCH
- Proteomic and immunologic analyses of brain tumor exosomes
- (2008) Michael W. Graner et al. FASEB JOURNAL
- Identification of c-Src Tyrosine Kinase Substrates Using Mass Spectrometry and Peptide Microarrays
- (2008) Ramars Amanchy et al. JOURNAL OF PROTEOME RESEARCH
- Global Impact of Oncogenic Src on a Phosphotyrosine Proteome
- (2008) Weifeng Luo et al. JOURNAL OF PROTEOME RESEARCH
- Anin VivoMembrane Density Perturbation Strategy for Identification of Liver Sinusoidal Surface Proteome Accessible from the Vasculature
- (2008) Xuanwen Li et al. JOURNAL OF PROTEOME RESEARCH
- Analysis of Cell Surface Proteome Changes via Label-free, Quantitative Mass Spectrometry
- (2008) Ralph Schiess et al. MOLECULAR & CELLULAR PROTEOMICS
- Temporal Perturbation of Tyrosine Phosphoproteome Dynamics Reveals the System-wide Regulatory Networks
- (2008) Masaaki Oyama et al. MOLECULAR & CELLULAR PROTEOMICS
- Human Proteinpedia enables sharing of human protein data
- (2008) Suresh Mathivanan et al. NATURE BIOTECHNOLOGY
- Quantitative proteomics using stable isotope labeling with amino acids in cell culture
- (2008) H C Harsha et al. Nature Protocols
- Human Proteinpedia: a unified discovery resource for proteomics research
- (2008) Kumaran Kandasamy et al. NUCLEIC ACIDS RESEARCH
- Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
- (2008) Da Wei Huang et al. NUCLEIC ACIDS RESEARCH
- Purification of low-abundance Arabidopsis plasma-membrane protein complexes and identification of candidate components
- (2008) Yiping Qi et al. PLANT JOURNAL
- Proteomic profiling of exosomes: Current perspectives
- (2008) Richard J. Simpson et al. PROTEOMICS
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started