Nutriproteomics: Facts, concepts, and perspectives

Immunomodulatory properties of the milk whey products obtained by enzymatic and microbial hydrolysis

(2015) Shang-Min Huang et al.   INTERNATIONAL JOURNAL OF FOOD SCIENCE AND TECHNOLOGY

Component-Resolved Diagnostic of Cow’s Milk Allergy by Immunoaffinity Capillary Electrophoresis–Matrix Assisted Laser Desorption/Ionization Mass Spectrometry

(2014) Natalia Gasilova et al.   ANALYTICAL CHEMISTRY

Nature’s Chemical Signatures in Human Olfaction: A Foodborne Perspective for Future Biotechnology

(2014) Andreas Dunkel et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Calorie restriction-induced changes in the secretome of human adipocytes, comparison with resveratrol-induced secretome effects

(2014) Johan Renes et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

PHOXTRACK–a tool for interpreting comprehensive datasets of post-translational modifications of proteins

(2014) Christopher Weidner et al.   BIOINFORMATICS

Low Protein Intake Is Associated with a Major Reduction in IGF-1, Cancer, and Overall Mortality in the 65 and Younger but Not Older Population

(2014) Morgan E. Levine et al.   Cell Metabolism

Dietary Protein Intake and Incidence of Type 2 Diabetes in Europe: The EPIC-InterAct Case-Cohort Study

(2014) Monique van Nielen et al.   DIABETES CARE

Characterization of Grain-Specific Peptide Markers for the Detection of Gluten by Mass Spectrometry

(2014) Katherine L. Fiedler et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Food-derived opioid peptides inhibit cysteine uptake with redox and epigenetic consequences

(2014) Malav S. Trivedi et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

Integrative Analysis of Transcriptomics, Proteomics, and Metabolomics Data of White Adipose and Liver Tissue of High-Fat Diet and Rosiglitazone-Treated Insulin-Resistant Mice Identified Pathway Alterations and Molecular Hubs

(2014) David Meierhofer et al.   JOURNAL OF PROTEOME RESEARCH

Whey Protein Delays Gastric Emptying and Suppresses Plasma Fatty Acids and Their Metabolites Compared to Casein, Gluten, and Fish Protein

(2014) Jan Stanstrup et al.   JOURNAL OF PROTEOME RESEARCH

Next Generation of Food Allergen Quantification Using Mass Spectrometric Systems

(2014) Martina Koeberl et al.   JOURNAL OF PROTEOME RESEARCH

The Metabolite Profiles of the Obese Population Are Gender-Dependent

(2014) Guoxiang Xie et al.   JOURNAL OF PROTEOME RESEARCH

Prevention and management of type 2 diabetes: dietary components and nutritional strategies

(2014) Sylvia H Ley et al.   LANCET

Mechanistic Peptidomics: Factors That Dictate Specificity in the Formation of Endogenous Peptides in Human Milk

(2014) Andres Guerrero et al.   MOLECULAR & CELLULAR PROTEOMICS

Discovery of modulators of HIV-1 infection from the human peptidome

(2014) Jan Münch et al.   NATURE REVIEWS MICROBIOLOGY

Proteomics and circadian rhythms: It's all about signaling!

(2014) Daniel Mauvoisin et al.   PROTEOMICS

Transcriptomics assisted proteomic analysis ofNicotiana occidentalisinfected byCandidatusPhytoplasma mali strain AT

(2014) Toni Luge et al.   PROTEOMICS

Model organism proteomics as a tool for the study of host-microbiome interactions

(2014) Liam Cassidy et al.   Proteomics Clinical Applications

Opsin, a Structural Model for Olfactory Receptors?

(2013) Jung Hee Park et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Targeted Quantitation of Proteins by Mass Spectrometry

(2013) Daniel C. Liebler et al.   BIOCHEMISTRY

Xenobiotics Shape the Physiology and Gene Expression of the Active Human Gut Microbiome

(2013) Corinne Ferrier Maurice et al.   CELL

Nutritional epidemiology: New perspectives for understanding the diet-disease relationship?

(2013) H Boeing   EUROPEAN JOURNAL OF CLINICAL NUTRITION

Neonatal anthropometrics and correlation to childhood obesity—data from the Danish Children’s Obesity Clinic

(2013) Ulrik Lausten-Thomsen et al.   EUROPEAN JOURNAL OF PEDIATRICS

Protein set analyses: how could this impact the clinic?

(2013) Sascha Saueru   Expert Review of Proteomics

Analysis of the Endogenous Peptide Profile of Milk: Identification of 248 Mainly Casein-Derived Peptides

(2013) Florian Baum et al.   JOURNAL OF PROTEOME RESEARCH

Extensive in vivo Human Milk Peptidomics Reveals Specific Proteolysis Yielding Protective Antimicrobial Peptides

(2013) David C. Dallas et al.   JOURNAL OF PROTEOME RESEARCH

Combined N-Glycome and N-Glycoproteome Analysis of the Lotus japonicus Seed Globulin Fraction Shows Conservation of Protein Structure and Glycosylation in Legumes

(2013) Svend Dam et al.   JOURNAL OF PROTEOME RESEARCH

Metaproteomics of our microbiome — Developing insight in function and activity in man and model systems

(2013) Carolin A. Kolmeder et al.   Journal of Proteomics

Status of Large-scale Analysis of Post-translational Modifications by Mass Spectrometry

(2013) Jesper V. Olsen et al.   MOLECULAR & CELLULAR PROTEOMICS

Protein Sets Define Disease States and PredictIn VivoEffects of Drug Treatment

(2013) David Meierhofer et al.   MOLECULAR & CELLULAR PROTEOMICS

Regulation of dietary choice by the decision-making circuitry

(2013) Antonio Rangel   NATURE NEUROSCIENCE

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Single-cell sequencing-based technologies will revolutionize whole-organism science

(2013) Ehud Shapiro et al.   NATURE REVIEWS GENETICS

Chromatin modifiers and remodellers: regulators of cellular differentiation

(2013) Taiping Chen et al.   NATURE REVIEWS GENETICS

Evaluating the Impact of Different Sequence Databases on Metaproteome Analysis: Insights from a Lab-Assembled Microbial Mixture

(2013) Alessandro Tanca et al.   PLoS One

Comprehensive proteomic datasets for studying adipocyte-macrophage cell-cell communication

(2013) Anja Freiwald et al.   PROTEOMICS

Model Organisms Proteomics-From Holobionts to Human Nutrition

(2013) Andreas Tholey et al.   PROTEOMICS

Diagnostic Proteomics: Will this impact the clinic?

(2013) Sascha Sauer   Proteomics Clinical Applications

On best practices: The Institute of Medicine scheme for developing, validating, and demonstrating clinical utility of omics-based diagnostic and predictive tests

(2013) Gilbert S. Omenn   Proteomics Clinical Applications

Targeted proteomics strategy applied to biomarker evaluation

(2013) Yeoun Jin Kim et al.   Proteomics Clinical Applications

Following the Flavor

(2013) K. Kupferschmidt   SCIENCE

The Long-Term Stability of the Human Gut Microbiota

(2013) J. J. Faith et al.   SCIENCE

Cancer Genome Landscapes

(2013) B. Vogelstein et al.   SCIENCE

Single-Cell Metabolomics: Analytical and Biological Perspectives

(2013) R. Zenobi   SCIENCE

Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice

(2013) V. K. Ridaura et al.   SCIENCE

Towards metabolic biomarkers of insulin resistance and type 2 diabetes: progress from the metabolome

(2013) Lee D Roberts et al.   Lancet Diabetes & Endocrinology

Nutriproteomics: A promising tool to link diet and diseases in nutritional research

(2012) Vijayalakshmi Ganesh et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee

(2012) Jia-Ming Chang et al.   BMC BIOINFORMATICS

Developmental origins of non-communicable disease: Implications for research and public health

(2012) Robert Barouki et al.   Environmental Health

Implementation of proteomic biomarkers: making it work

(2012) Harald Mischak et al.   EUROPEAN JOURNAL OF CLINICAL INVESTIGATION

Metaproteome Analysis and Molecular Genetics of Rat Intestinal Microbiota Reveals Section and Localization Resolved Species Distribution and Enzymatic Functionalities

(2012) Sven-Bastiaan Haange et al.   JOURNAL OF PROTEOME RESEARCH

Unipept: Tryptic Peptide-Based Biodiversity Analysis of Metaproteome Samples

(2012) Bart Mesuere et al.   JOURNAL OF PROTEOME RESEARCH

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

De novo derivation of proteomes from transcriptomes for transcript and protein identification

(2012) Vanessa C Evans et al.   NATURE METHODS

Next-generation proteomics: towards an integrative view of proteome dynamics

(2012) A. F. Maarten Altelaar et al.   NATURE REVIEWS GENETICS

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

Secreted proteins as a fundamental source for biomarker discovery

(2012) Miroslava Stastna et al.   PROTEOMICS

Interactome mapping for analysis of complex phenotypes: Insights from benchmarking binary interaction assays

(2012) Pascal Braun   PROTEOMICS

Detecting Causality in Complex Ecosystems

(2012) G. Sugihara et al.   SCIENCE

Expression cartography of human tissues using self organizing maps

(2011) Henry Wirth et al.   BMC BIOINFORMATICS

Interactome Networks and Human Disease

(2011) Marc Vidal et al.   CELL

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

A first step towards practical single cell proteomics: a microfluidic antibody capture chip with TIRF detection

(2011) Ali Salehi-Reyhani et al.   LAB ON A CHIP

PEAKS DB:De NovoSequencing Assisted Database Search for Sensitive and Accurate Peptide Identification

(2011) Jing Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS

Nutriproteomics: technologies and applications for identification and quantification of biomarkers and ingredients

(2011) Sandra Sénéchal et al.   PROCEEDINGS OF THE NUTRITION SOCIETY

Predicting a Human Gut Microbiota's Response to Diet in Gnotobiotic Mice

(2011) J. J. Faith et al.   SCIENCE

Mass-spectrometry-based clinical proteomics – a review and prospective

(2010) Carol E. Parker et al.   ANALYST

Differential analysis of Crohnʼs disease and ulcerative colitis by mass spectrometry

(2010) Anja Freiwald et al.   INFLAMMATORY BOWEL DISEASES

Antimicrobial peptides generated from milk proteins: a survey and prospects for application in the food industry. A review

(2010) NOREDDINE BENKERROUM   INTERNATIONAL JOURNAL OF DAIRY TECHNOLOGY

Osteopontin Is Cleaved at Multiple Sites Close to Its Integrin-binding Motifs in Milk and Is a Novel Substrate for Plasmin and Cathepsin D

(2010) Brian Christensen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Proteomics in Nutrition: Status Quo and Outlook for Biomarkers and Bioactives

(2010) Martin Kussmann et al.   JOURNAL OF PROTEOME RESEARCH

A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics

(2010) Alexey I. Nesvizhskii   Journal of Proteomics

The impact of the microbiota on the pathogenesis of IBD: lessons from mouse infection models

(2010) Sandra Nell et al.   NATURE REVIEWS MICROBIOLOGY

Diets with High or Low Protein Content and Glycemic Index for Weight-Loss Maintenance

(2010) Thomas Meinert Larsen et al.   NEW ENGLAND JOURNAL OF MEDICINE

Anti-oxidative capacity of enzymatically released peptides from soybean protein isolate

(2009) Christopher Beermann et al.   EUROPEAN FOOD RESEARCH AND TECHNOLOGY

Potential for amino acids supplementation during inflammatory bowel diseases

(2009) Moïse Coëffier et al.   INFLAMMATORY BOWEL DISEASES

Proteomic Analysis of Mature Soybean Seeds from the Chernobyl Area Suggests Plant Adaptation to the Contaminated Environment

(2009) Maksym Danchenko et al.   JOURNAL OF PROTEOME RESEARCH

Soybean Proteome Database: A Data Resource for Plant Differential Omics

(2009) Katsumi Sakata et al.   JOURNAL OF PROTEOME RESEARCH

Wheat quality related differential expressions of albumins and globulins revealed by two-dimensional difference gel electrophoresis (2-D DIGE)

(2009) Liyan Gao et al.   Journal of Proteomics

Challenging homeostasis to define biomarkers for nutrition related health

(2009) Ben van Ommen et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

A rapid and simple procedure for the depletion of abundant storage proteins from legume seeds to advance proteome analysis: A case study using Glycine max

(2009) Hari B. Krishnan et al.   PROTEOMICS

Food Allergy: Review, Classification and Diagnosis

(2009) Antonella Cianferoni et al.   ALLERGOLOGY INTERNATIONAL

Human Olfactory Receptor Families and Their Odorants

(2008) Dietmar Krautwurst   CHEMISTRY & BIODIVERSITY

Bioactive peptides and proteins from foods: indication for health effects

(2008) Niels Peter Möller et al.   EUROPEAN JOURNAL OF NUTRITION

PVS: a web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery

(2008) M. Garcia-Boronat et al.   NUCLEIC ACIDS RESEARCH

Nutrigenomics and personalized nutrition: science and concept

(2008) Martin Kussmann et al.   Personalized Medicine

Dissecting the proteome of pea mature seeds reveals the phenotypic plasticity of seed protein composition

(2008) Michael Bourgeois et al.   PROTEOMICS