Review
Chemistry, Inorganic & Nuclear
Sam P. de Visser, Yen-Ting Lin, Hafiz Saqib Ali, Umesh Kumar Bagha, Gourab Mukherjee, Chivukula Sastri
Summary: This paper discusses the research progress on product selectivity in bioinorganic chemistry, focusing on the dominant role and mechanism of negative catalysis in enzymatic reactions.
COORDINATION CHEMISTRY REVIEWS
(2021)
Article
Biochemistry & Molecular Biology
Giovanna De Simone, Alessandra di Masi, Alessandra Pesce, Martino Bolognesi, Chiara Ciaccio, Lorenzo Tognaccini, Giulietta Smulevich, Stefania Abbruzzetti, Cristiano Viappiani, Stefano Bruno, Sara Della Monaca, Donatella Pietraforte, Paola Fattibene, Massimo Coletta, Paolo Ascenzi
Summary: The structural and functional properties of nitrobindins in ferrous Mycobacterium tuberculosis (Mt-Nb) and human (Hs-Nb) were investigated, revealing significant differences in ligand binding and reaction rates compared to most hemoproteins. The lack of pH dependence in the coordination process and the weakening or cleavage of the proximal Fe-His bond upon ligand binding were highlighted as distinctive features of these nitrobindins. This suggests a unique functional role for Nbs distinct from other eukaryotic and prokaryotic hemoproteins.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Review
Chemistry, Multidisciplinary
Sarmistha Bhunia, Arnab Ghatak, Abhishek Dey
Summary: Activation and reduction of O-2 and H2O2 by synthetic and biosynthetic iron porphyrin models have been proven to be a versatile platform for evaluating second-sphere effects important in natural heme active sites. By installing different functional groups around the porphyrin ligand, several second-sphere effects have been evaluated under controlled environments, providing fundamental insights into the roles played by these weak interactions in nature.
Article
Chemistry, Physical
Nevin Turan, Kenan Buldurun, Ragip Adiguzel, Abdulmelik Aras, Fikret Turkan, Ercan Bursal
Summary: In this study, novel azo dye metal complexes were synthesized and tested for their biochemical properties, including antioxidant and enzyme inhibitory activities. The results showed that the Ru(II) complex exhibited the best inhibition values against GST, AChE, and BChE enzymes.
JOURNAL OF MOLECULAR STRUCTURE
(2021)
Article
Chemistry, Multidisciplinary
Marta Meneghello, Alexandre Uzel, Marianne Broc, Rita R. Manuel, Axel Magalon, Christophe Leger, Ines A. C. Pereira, Anne Walburger, Vincent Fourmond
Summary: Metal-based formate dehydrogenases are enzymes that require molybdenum or tungsten ions to catalyze the conversion between formate and CO2. The coordination of the metal ion in the active form prevents direct binding of formate to the metal. The study's findings provide strong evidence for the hypothesis that the oxidation of formate occurs in the second coordination sphere of the metal.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2023)
Article
Biochemistry & Molecular Biology
Kayla L. Johnson, Amanda B. Graves, Kaitlyn Eckhert, Matthew D. Liptak
Summary: This study investigates the novel hydroxylation reaction catalyzed by MhuD enzyme by analyzing spectroscopic data and preparing N7S variant. The results suggest the presence of a hydrogen bond between Asn7 side-chain and the terminal oxygen of MhuD-heme-OOH, indicating its role in guiding the hydroxyl radical for the hydroxylation reaction.
JOURNAL OF INORGANIC BIOCHEMISTRY
(2023)
Article
Chemistry, Multidisciplinary
Jean-Noel Rebilly, Christian Herrero, Katell Senechal-David, Regis Guillot, Tanya Inceoglu, Helene Maisonneuve, Frederic Banse
Summary: Redox metalloenzymes achieve selective oxidation reactions using O-2 or H2O2 as oxidants and release harmless side-products like water. A new non-heme Fe-II complex with a pentaazadentate first coordination sphere and a pendant phenol group was synthesized and studied. The involvement of the attached phenol as a second coordination sphere moiety during H2O2 activation was supported by kinetic, variable temperature, and labelling studies. The results suggest a Fe-II -> (FeO)-O-IV conversion directed by the 2nd sphere phenol via protonation, leading to heterolytic O-O bond cleavage.
Review
Chemistry, Inorganic & Nuclear
Javier Marti-Rujas, Fang Guo
Summary: The article reports on the latest advances in solid-state dehydrohalogenation and halogenation reactions focusing on the second sphere coordination perspective. The study emphasizes outer sphere adducts where protonated organic cations act as hydrogen bond donors and transition metal anions act as hydrogen bond acceptors. The transformations from second sphere coordination to first sphere coordination are induced by external stimuli and reveal a unique solid-state chemistry and reactivity.
DALTON TRANSACTIONS
(2021)
Article
Chemistry, Multidisciplinary
Qiuhua Liu, Wanjie Ren, Siwei Zhang, Yang Huang, Dilong Chen, Wennan Zeng, Zaichun Zhou, Lin He, Wenping Guo, Jianfeng Li
Summary: The geometric architecture and electronic configurations of heme proteins play crucial roles in their activity. This study focused on designing and synthesizing a series of copper(II) porphyrin complexes with shortened straps to modulate molecular conformations, resulting in improved catalytic performance. By manipulating ligand geometry, a novel strategy to enhance catalytic activity of heme analogs was proposed and validated.
CHEMISTRY-A EUROPEAN JOURNAL
(2022)
Article
Chemistry, Inorganic & Nuclear
Christina Wegeberg, Mathias L. Skavenborg, Andrea Liberato, James N. McPherson, Wesley R. Browne, Erik D. Hedegard, Christine J. McKenzie
Summary: A series of iron(IV) oxo complexes with different donors were prepared in water at different pH values. Differences in reactivities towards C-H substrates were observed, with one complex showing higher reactivity at pH 2. Supramolecular assistance by the first and second coordination spheres in activating the substrate was proposed, and it was noted that slow water oxidation acts as a competing background reaction.
INORGANIC CHEMISTRY
(2021)
Article
Biochemical Research Methods
Fitzya Y. Bocanegra-Jimenez, Gabriela M. Montero-Moran, Samuel Lara-Gonzalez
Summary: XanA is a unique enzyme in fungi responsible for converting xanthine to uric acid. In this study, the XanA enzyme from Aspergillus oryzae was successfully purified in its active form from E. coli bacteria, and its optimal activity conditions were determined.
PROTEIN EXPRESSION AND PURIFICATION
(2021)
Article
Chemistry, Multidisciplinary
Ornella Maglio, Marco Chino, Claudia Vicari, Vincenzo Pavone, Ricardo O. Louro, Angela Lombardi
Summary: Fe-Mimochrome VI*a is a synthetic peroxidase and peroxygenase with two different peptides covalently linked to deuteroheme. Shortening the distance between the distal peptide and heme allowed for the separation and characterization of two regioisomers, which differ in activity and axial-ligand orientation. These findings suggest that synthetic metalloenzymes could be useful for understanding the role of axial ligand orientation in peroxidase activity.
CHEMICAL COMMUNICATIONS
(2021)
Article
Chemistry, Multidisciplinary
Shobhit S. Chaturvedi, Simahudeen Bathir Jaber Sathik Rifayee, Sodiq O. Waheed, Jon Wildey, Cait Warner, Christopher J. Schofield, Tatyana G. Karabencheva-Christova, Christo Z. Christov
Summary: This study develops a computational framework to identify non-active-site residues relevant for catalysis in Fe(II)-dependent oxygenases. The study explores the mechanisms by which these residues influence the HAT reaction and demonstrates the plausibility of using substitutions of dynamically correlated residues as a tool to tune HAT in non-heme Fe(II)-and 2OG-dependent enzymes.
Article
Chemistry, Multidisciplinary
Mary Ortmayer, Florence J. Hardy, Matthew G. Quesne, Karl Fisher, Colin Levy, Derren J. Heyes, C. Richard A. Catlow, Sam P. de Visser, Stephen E. J. Rigby, Sam Hay, Anthony P. Green
Summary: This study utilizes an expanded genetic code to investigate the impact of hydrogen bonding interactions on ferryl heme structure and reactivity, revealing that modifications to the active site amino acid Trp51 can significantly affect the reactivity of ferryl heme intermediates and regulate catalytic function.
Review
Chemistry, Multidisciplinary
Hannah M. Rhoda, Alexander J. Heyer, Benjamin E. R. Snyder, Dieter Plessers, Max L. Bols, Robert A. Schoonheydt, Bert F. Sels, Edward Solomon
Summary: Second-sphere interactions play a crucial role in the high activity and selectivity of transition-metal-exchanged zeolites, despite the differences in active-site structures compared to metalloenzymes.
Article
Chemistry, Physical
Edward Solomon, Anex Jose
Summary: This paper provides an overview of the unique spectroscopic features of metal sites in biology, reflecting novel geometric and electronic structures imposed by the protein; it introduces the example of the blue copper active site and its significance in biological electron transfer; it also demonstrates the role of the protein in the geometric and electronic structure of the active site.
FARADAY DISCUSSIONS
(2022)
Article
Oncology
John A. Hangasky, Wei Chen, Sigrid P. Dubois, Anusara Daenthanasanmak, Jurgen R. Muller, Ralph Reid, Thomas A. Waldmann, Daniel Santi
Summary: This study developed a very long-acting prodrug of IL-15 that can maintain sustained release and provide prolonged stimulation of target immune cells. The prodrug exhibited remarkable expansion of NK and gamma delta T cells, as well as high anticancer activity when administered in combination with a suitable immuno-oncology agent.
JOURNAL FOR IMMUNOTHERAPY OF CANCER
(2022)
Article
Biochemistry & Molecular Biology
Yang Ha, Sara A. Dille, Augustin Braun, Kyle Colston, Britt Hedman, Keith O. Hodgson, Partha Basu, Edward I. Solomon
Summary: This study investigates the bonding descriptions and geometric structures of oxidized dithiolene complexes bound to low-valent late transition metal ions, such as Zn-II, Cu-I, and Cu-II, using a combination of S K-edge X-ray absorption spectroscopy and density functional theory calculations. The study quantifies the competition between ligand-ligand repulsion and changes in electronic structures in determining the final geometric structures of the complexes.
JOURNAL OF INORGANIC BIOCHEMISTRY
(2022)
Correction
Instruments & Instrumentation
Diego A. Huyke, Ashwin Ramachandran, Oscar Ramirez-Neri, Jose A. Guerrero-Cruz, Leland B. Gee, Augustin Braun, Dimosthenis Sokaras, Brenda Garcia-Estrada, Edward I. Solomon, Britt Hedman, Mario U. Delgado-Jaime, Daniel P. DePonte, Thomas Kroll, Juan G. Santiago
JOURNAL OF SYNCHROTRON RADIATION
(2022)
Article
Multidisciplinary Sciences
Ioannis Kipouros, Agnieszka Stanczak, Jake W. Ginsbach, Prokopis C. Andrikopoulos, Lubomir Rulsek, Edward I. Solomon
Summary: Melanins are important biopolymer pigments that provide photoprotection, and their biosynthesis involves the catalytic role of tyrosinase (Ty). This study combines spectroscopic, kinetic, and computational methods to investigate the mechanism of the rate-limiting step in melanin biosynthesis. The results provide insights into the O-2 activation and reactivity by the active sites of coupled binuclear copper, with implications in biocatalysis.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2022)
Review
Biochemistry & Molecular Biology
Ioannis Kipouros, Edward I. Solomon
Summary: Tyrosinase, a member of the CBC protein family, has been studied extensively. Recent research has revealed the structure of a catalytic ternary intermediate and proposed a revised mechanism for monophenol monooxygenation. These findings are significant for understanding structure-function relationships in CBC enzymes and the activation of O-2 in bioinorganic active sites.
Article
Chemistry, Physical
Dieter Plessers, Alexander J. Heyer, Hannah M. Rhoda, Max L. Bols, Edward I. Solomon, Robert A. Schoonheydt, Bert F. Sels
Summary: The industrial implementation of a direct methane-to-methanol process would bring about environmental and economic benefits. Copper zeolites can effectively catalyze this reaction at lower temperatures, especially mordenite zeolites which enable high methanol production. By changing the co-cation, a new method for simplifying the material is introduced, allowing for better analysis, which has implications for the study and tuning of heterogeneous catalysts in general.
Article
Chemistry, Multidisciplinary
Bohee Kim, Magdalene T. T. Brueggemeyer, Wesley J. J. Transue, Younwoo Park, Jaeheung Cho, Maxime A. A. Siegler, Edward I. I. Solomon, Kenneth D. D. Karlin
Summary: Lytic polysaccharide monooxygenases are important in converting biomass to biofuel, and recent studies show that their peroxygenase activity using H2O2 as an oxidant is more important than their monooxygenase functionality. New insights into this activity have been described, including ligand-substrate hydroxylation and Fenton-type chemistry reactions.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
(2023)
Article
Chemistry, Multidisciplinary
Jeffrey T. T. Babicz Jr, Melanie S. Rogers, Dory E. DeWeese, Kyle D. Sutherlin, Rahul Banerjee, Lars H. Bottger, Yoshitaka Yoda, Nobumoto Nagasawa, Makina Saito, Shinji Kitao, Masayuki Kurokuzu, Yasuhiro Kobayashi, Kenji Tamasaku, Makoto Seto, John D. Lipscomb, Edward I. Solomon
Summary: The extradiol dioxygenases and intradiol dioxygenases play a crucial role in the carbon cycle by catalyzing oxidative aromatic ring cleavage. This study investigates the mechanisms behind their regiospecificity in cleavage, using EDO and IDO enzymes as models. The results reveal the structural and electronic properties of key intermediates and propose a viable mechanism for intradiol cleavage.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
(2023)
Article
Chemistry, Multidisciplinary
Augustin Braun, Leland B. Gee, Michael W. Mara, Ethan A. Hill, Thomas Kroll, Dennis Nordlund, Dimosthenis Sokaras, Pieter Glatzel, Britt Hedman, Keith O. Hodgson, A. S. Borovik, Michael L. Baker, Edward I. Solomon
Summary: Fe K-edge XAS is widely used for studying high-valent iron intermediates in catalysts. The 4p-mixing into the 3d orbitals complicates the analysis, but understanding it correctly enables deeper insights into the structure and reactivity. This study reveals that the loss of inversion in the equatorial plane leads to 4p mixing into the 3dx2-y2,xy orbitals, providing structural insights for distinguishing 6- vs 5-coordinate active sites. Furthermore, the study investigates the electronic structure of Fe(IV)=O active sites and their reactivity selectivity through O K-edge XAS.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
(2023)
Article
Chemistry, Multidisciplinary
Casey Van Stappen, Huiguang Dai, Anex Jose, Shiliang Tian, Edward I. Solomon, Yi Lu
Summary: This research investigates the influence of the primary and secondary coordination sphere on CuII-catalyzed S-nitrosylation. The study reveals that kinetic competency is correlated with Cu-S bond strength, Cu spin localization, and relative S(p(s)) vs S(p(p)) contributions to the ground state.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
(2023)
Article
Chemistry, Multidisciplinary
Hyeongtaek Lim, Magdalene T. Brueggemeyer, Wesley J. Transue, Katlyn K. Meier, Stephen M. Jones, Thomas Kroll, Dimosthenis Sokaras, Bradley Kelemen, Britt Hedman, Keith O. Hodgson, Edward I. Solomon
Summary: This study investigates the electronic structure of the d(10) Cu(I) active site in LPMO using Kβ X-ray emission spectroscopy (XES). The lack of inversion symmetry in the His-brace site enables the required 3d/p mixing for intensity in the Kβ valence-to-core (VtC) XES spectrum of Cu(I)-LPMO. These Kβ XES data are correlated to density functional theory (DFT) calculations to define the bonding, particularly the frontier molecular orbital (FMO) of the Cu(I) site. These experimentally validated DFT calculations are used to evaluate the reaction coordinate for homolytic cleavage of the H2O2 O-O bond and understand the activation of the geometric and electronic structure of the Cu(I)-LPMO site for rapid reactivity with H2O2.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
(2023)
Article
Chemistry, Multidisciplinary
Asmita Singha, Alina Sekretareva, Lizhi Tao, Hyeongtaek Lim, Yang Ha, Augustin Braun, Stephen M. Jones, Britt Hedman, Keith O. Hodgson, R. David Britt, Daniel J. Kosman, Edward I. Solomon
Summary: In multicopper oxidases (MCOs), the T1 Cu accepts electrons from the substrate and transfers them to the TNC, reducing O-2 to H2O. The literature fails to explain the wide range of T1 potentials in MCOs, ranging from 340 to 780 mV. This study focuses on the difference in potential of the T1 center in Fet3p and Trametes versicolor laccase (TvL) that have the same ligand set, and reveals that second-sphere H-bonding interactions and carboxylate residues significantly lower the T1 potential.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
(2023)
Article
Chemistry, Multidisciplinary
Ioannis Kipouros, Agnieszka Stanczak, Martin Culka, Erik Andris, Timothy R. Machonkin, Lubomir Rulisek, Edward Solomon
Summary: This study reveals the H-bonding interactions between active-site waters and the mu-eta(2):eta(2)-peroxide of oxy-tyrosinase, and defines their effects on the Cu(ii)(2)O-2 electronic structure and O-2 activation using spectroscopic and computational methods.
CHEMICAL COMMUNICATIONS
(2022)