Links between genome replication and chromatin landscapes

The histone chaperone complex HIR maintains nucleosome occupancy and counterbalances impaired histone deposition in CAF-1 complex mutants

(2015) Céline Duc et al.   PLANT JOURNAL

Histone H3 Dynamics in Plant Cell Cycle and Development

(2014) Sofía Otero et al.   CYTOGENETIC AND GENOME RESEARCH

Hira-Mediated H3.3 Incorporation Is Required for DNA Replication and Ribosomal RNA Transcription in the Mouse Zygote

(2014) Chih-Jen Lin et al.   DEVELOPMENTAL CELL

Prereplicative complexes assembled in vitro support origin-dependent and independent DNA replication

(2014) K. F. On et al.   EMBO JOURNAL

Nascent chromatin capture proteomics determines chromatin dynamics during DNA replication and identifies unknown fork components

(2014) Constance Alabert et al.   NATURE CELL BIOLOGY

Endocycles: a recurrent evolutionary innovation for post-mitotic cell growth

(2014) Bruce A. Edgar et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

A DEK Domain-Containing Protein Modulates Chromatin Structure and Function inArabidopsis

(2014) Sascha Waidmann et al.   PLANT CELL

The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States

(2014) J. Sequeira-Mendes et al.   PLANT CELL

Homology-dependent repair is involved in 45S rDNA loss in plant CAF-1 mutants

(2014) Veronika Muchová et al.   PLANT JOURNAL

Selective Methylation of Histone H3 Variant H3.1 Regulates Heterochromatin Replication

(2014) Y. Jacob et al.   SCIENCE

Regulation of epidermal cell fate in Arabidopsis roots: the importance of multiple feedback loops

(2014) John Schiefelbein et al.   Frontiers in Plant Science

Looking at plant cell cycle from the chromatin window

(2014) Bénédicte Desvoyes et al.   Frontiers in Plant Science

Clustered regulatory elements at nucleosome-depleted regions punctuate a constant nucleosomal landscape in Schizosaccharomyces pombe

(2013) Ignacio Soriano et al.   BMC GENOMICS

High-resolution analysis of DNA synthesis start sites and nucleosome architecture at efficient mammalian replication origins

(2013) Rodrigo Lombraña et al.   EMBO JOURNAL

Location, location, location: it's all in the timing for replication origins

(2013) O. M. Aparicio   GENES & DEVELOPMENT

Bubble-seq analysis of the human genome reveals distinct chromatin-mediated mechanisms for regulating early- and late-firing origins

(2013) Larry D. Mesner et al.   GENOME RESEARCH

Specification of DNA Replication Origins and Genomic Base Composition in Fission Yeasts

(2013) Laura Mojardín et al.   JOURNAL OF MOLECULAR BIOLOGY

The Arabidopsis SWR1 Chromatin-Remodeling Complex Is Important for DNA Repair, Somatic Recombination, and Meiosis

(2013) M. Rosa et al.   PLANT CELL

Multiple Functions of Kip-Related Protein5 Connect Endoreduplication and Cell Elongation

(2013) T. Jegu et al.   PLANT PHYSIOLOGY

ANTI-SILENCING FUNCTION1 Proteins Are Involved in Ultraviolet-Induced DNA Damage Repair and Are Cell Cycle Regulated by E2F Transcription Factors in Arabidopsis

(2013) L. D. Lario et al.   PLANT PHYSIOLOGY

Chromatin and DNA Replication

(2013) D. M. MacAlpine et al.   Cold Spring Harbor Perspectives in Biology

DNA Replication Origins

(2013) A. C. Leonard et al.   Cold Spring Harbor Perspectives in Biology

New insights into replication origin characteristics in metazoans

(2012) Christelle Cayrou et al.   CELL CYCLE

DNA Replication Origin Function Is Promoted by H3K4 Di-methylation in Saccharomyces cerevisiae

(2012) L. F. Rizzardi et al.   GENETICS

Chromatin replication and epigenome maintenance

(2012) Constance Alabert et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Unraveling cell type–specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs

(2012) Emilie Besnard et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Chromatin architectures at fission yeast transcriptional promoters and replication origins

(2012) Robert M. Givens et al.   NUCLEIC ACIDS RESEARCH

Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana

(2012) H. Stroud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulating DNA Replication in Plants

(2012) M. d. l. P. Sanchez et al.   Cold Spring Harbor Perspectives in Biology

Spatio-Temporal Organization of Replication in Bacteria and Eukaryotes (Nucleoids and Nuclei)

(2012) D. Jackson et al.   Cold Spring Harbor Perspectives in Biology

Dynamic Deposition of Histone Variant H3.3 Accompanies Developmental Remodeling of the Arabidopsis Transcriptome

(2012) Heike Wollmann et al.   PLoS Genetics

DNA Methyltransferases Are Required to Induce Heterochromatic Re-Replication in Arabidopsis

(2012) Hume Stroud et al.   PLoS Genetics

Genome-wide identification and characterization of replication origins by deep sequencing

(2012) Jia Xu et al.   GENOME BIOLOGY

On the opportunistic nature of transcription and replication initiation in the metazoan genome

(2011) Joana Sequeira-Mendes et al.   BIOESSAYS

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

(2011) François Roudier et al.   EMBO JOURNAL

Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features

(2011) C. Cayrou et al.   GENOME RESEARCH

Analysis of model replication origins in Drosophila reveals new aspects of the chromatin landscape and its relationship to origin activity and the prereplicative complex

(2011) Jun Liu et al.   MOLECULAR BIOLOGY OF THE CELL

Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks

(2011) Celina Costas et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Arabidopsis homologues of the histone chaperone ASF1 are crucial for chromatin replication and cell proliferation in plant development

(2011) Yan Zhu et al.   PLANT JOURNAL

Progress in understanding DNA replication control

(2011) Celina Costas et al.   PLANT SCIENCE

Conserved nucleosome positioning defines replication origins

(2010) M. L. Eaton et al.   GENES & DEVELOPMENT

Chromatin signatures of the Drosophila replication program

(2010) M. L. Eaton et al.   GENOME RESEARCH

Impact of nucleosome dynamics and histone modifications on cell proliferation during Arabidopsis development

(2010) B Desvoyes et al.   HEREDITY

HBO1 Histone Acetylase Activity Is Essential for DNA Replication Licensing and Inhibited by Geminin

(2010) Benoit Miotto et al.   MOLECULAR CELL

PHF8 mediates histone H4 lysine 20 demethylation events involved in cell cycle progression

(2010) Wen Liu et al.   NATURE

Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases

(2010) Yannick Jacob et al.   NATURE

The histone H4 Lys 20 methyltransferase PR-Set7 regulates replication origins in mammalian cells

(2010) Mathieu Tardat et al.   NATURE CELL BIOLOGY

Evaluating genome-scale approaches to eukaryotic DNA replication

(2010) David M. Gilbert   NATURE REVIEWS GENETICS

Eukaryotic DNA replication origins: many choices for appropriate answers

(2010) Marcel Méchali   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Dynamic changes in histone acetylation regulate origins of DNA replication

(2010) Ashwin Unnikrishnan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae

(2010) Alexandra B Lantermann et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Dysfunction of Chromatin Assembly Factor 1 Induces Shortening of Telomeres and Loss of 45S rDNA in Arabidopsis thaliana

(2010) I. Mozgova et al.   PLANT CELL

The histone shuffle: histone chaperones in an energetic dance

(2010) Chandrima Das et al.   TRENDS IN BIOCHEMICAL SCIENCES

DnaA and ORC: more than DNA replication initiators

(2010) Graham Scholefield et al.   TRENDS IN CELL BIOLOGY

Arabidopsis thaliana Chromosome 4 Replicates in Two Phases That Correlate with Chromatin State

(2010) Tae-Jin Lee et al.   PLoS Genetics

Preferential Re-Replication of Drosophila Heterochromatin in the Absence of Geminin

(2010) Queying Ding et al.   PLoS Genetics

The multiple facets of histone H4-lysine 20 methylationThis paper is one of a selection of papers published in this Special Issue, entitled CSBMCB’s 51st Annual Meeting – Epigenetics and Chromatin Dynamics, and has undergone the Journal’s usual peer review process.

(2009) Hongbo Yang et al.   Biochemistry and Cell Biology

H2A.Z-Containing Nucleosomes Mediate the Thermosensory Response in Arabidopsis

(2009) S. Vinod Kumar et al.   CELL

Replication timing and transcriptional control: beyond cause and effect—part II

(2009) Ichiro Hiratani et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Chromatin state marks cell-type- and gender-specific replication of the Drosophila genome

(2009) M. Schwaiger et al.   GENES & DEVELOPMENT

Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading

(2009) H. K. MacAlpine et al.   GENOME RESEARCH

Monomethylation of Histone H4-Lysine 20 Is Involved in Chromosome Structure and Stability and Is Essential for Mouse Development

(2009) H. Oda et al.   MOLECULAR AND CELLULAR BIOLOGY

Genomic Study of Replication Initiation in Human Chromosomes Reveals the Influence of Transcription Regulation and Chromatin Structure on Origin Selection

(2009) Neerja Karnani et al.   MOLECULAR BIOLOGY OF THE CELL

The Beauty of Being a Variant: H2A.Z and the SWR1 Complex in Plants

(2009) Rosana March-Díaz et al.   Molecular Plant

ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing

(2009) Yannick Jacob et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Dynamic Localization of the DNA Replication Proteins MCM5 and MCM7 in Plants

(2009) R. W. Shultz et al.   PLANT PHYSIOLOGY

H3 K36 Methylation Helps Determine the Timing of Cdc45 Association with Replication Origins

(2009) Fiona Pryde et al.   PLoS One

ArabidopsisORC1 is a PHD-containing H3K4me3 effector that regulates transcription

(2009) María de la Paz Sanchez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Restoring chromatin after replication: How new and old histone marks come together

(2009) Zuzana Jasencakova et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Transcription Initiation Activity Sets Replication Origin Efficiency in Mammalian Cells

(2009) Joana Sequeira-Mendes et al.   PLoS Genetics

Acetylation of Histone H3 Lysine 56 Regulates Replication-Coupled Nucleosome Assembly

(2008) Qing Li et al.   CELL

Acetylated Lysine 56 on Histone H3 Drives Chromatin Assembly after Repair and Signals for the Completion of Repair

(2008) Chin-Chuan Chen et al.   CELL

Mutations in theArabidopsis SWC6gene, encoding a component of the SWR1 chromatin remodelling complex, accelerate flowering time and alter leaf and flower development

(2008) Ana Lázaro et al.   JOURNAL OF EXPERIMENTAL BOTANY

Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks

(2008) Daniel Zilberman et al.   NATURE

Genome-wide studies highlight indirect links between human replication origins and gene regulation

(2008) J.-C. Cadoret et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chromatin dynamics during the plant cell cycle

(2008) M SANCHEZ et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals

(2008) Yair Field et al.   PLoS Computational Biology