Response of soil, leaf endosphere and phyllosphere bacterial communities to elevated CO2 and soil temperature in a rice paddy

Response of phyllosphere bacterial communities to elevated CO2 during rice growing season

(2014) Gaidi Ren et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Effects of Elevated Carbon Dioxide, Elevated Temperature, and Rice Growth Stage on the Community Structure of Rice Root–Associated Bacteria

(2014) Takashi Okubo et al.   MICROBES AND ENVIRONMENTS

Contrasting Response Patterns of Rice Phyllosphere Bacterial Taxa to Elevated CO2

(2014) Gai-Di REN et al.   PEDOSPHERE

Leaf and Root-Associated Fungal Assemblages Do Not Follow Similar Elevational Diversity Patterns

(2014) Aurore Coince et al.   PLoS One

Elevated temperature has stronger effects on the soil food web of a flooded paddy than does CO2

(2014) Hiroaki Okada et al.   SOIL BIOLOGY & BIOCHEMISTRY

The foliar microbiome

(2014) Josep Peñuelas et al.   TRENDS IN PLANT SCIENCE

Biodiversity and ecosystem stability: a synthesis of underlying mechanisms

(2013) Michel Loreau et al.   ECOLOGY LETTERS

New insights into the structure and function of phyllosphere microbiota through high-throughput molecular approaches

(2013) Gurdeep Rastogi et al.   FEMS MICROBIOLOGY LETTERS

Rice cultivar responses to elevated CO2 at two free-air CO2 enrichment (FACE) sites in Japan

(2013) Toshihiro Hasegawa et al.   FUNCTIONAL PLANT BIOLOGY

Isolation of a rice endophytic bacterium,Pantoeasp. Sd-1, with ligninolytic activity and characterization of its rice straw degradation ability

(2013) X. Q. Xiong et al.   LETTERS IN APPLIED MICROBIOLOGY

Long-Term Rice and Green Manure Rotation Alters the Endophytic Bacterial Communities of the Rice Root

(2013) Xiao-Xia Zhang et al.   MICROBIAL ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Community structures of N2-fixing bacteria associated with the phyllosphere of a Holm oak forest and their response to drought

(2013) L. Rico et al.   PLANT BIOLOGY

Host Genotype Shapes the Foliar Fungal Microbiome of Balsam Poplar (Populus balsamifera)

(2013) Miklós Bálint et al.   PLoS One

Sugarcane Growth Promotion by the Endophytic Bacterium Pantoea agglomerans 33.1

(2012) M. C. Quecine et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification

(2012) Pieter De Maayer et al.   BMC GENOMICS

Molecular and culture-dependent analyses revealed similarities in the endophytic bacterial community composition of leaves from three rice (Oryza sativa) varieties

(2012) Lucía Ferrando et al.   FEMS MICROBIOLOGY ECOLOGY

Spatial variability of phyllosphere fungal assemblages: genetic distance predominates over geographic distance in a European beech stand (Fagus sylvatica)

(2012) Tristan Cordier et al.   Fungal Ecology

Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce

(2012) Gurdeep Rastogi et al.   ISME Journal

Draft Genome Sequence of Pantoea ananatis B1-9, a Nonpathogenic Plant Growth-Promoting Bacterium

(2012) H. J. Kim et al.   JOURNAL OF BACTERIOLOGY

Genome Sequence of Enterobacter radicincitans DSM16656T, a Plant Growth-Promoting Endophyte

(2012) K. Witzel et al.   JOURNAL OF BACTERIOLOGY

Genome Sequence of Enterobacter sp. Strain SP1, an Endophytic Nitrogen-Fixing Bacterium Isolated from Sugarcane

(2012) B. Zhu et al.   JOURNAL OF BACTERIOLOGY

Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

The composition of phyllosphere fungal assemblages of European beech (Fagus sylvatica ) varies significantly along an elevation gradient

(2012) Tristan Cordier et al.   NEW PHYTOLOGIST

Microbial Community Changes Along a Land-Use Gradient of Desert Soil Origin

(2012) Bao-Zhan WANG et al.   PEDOSPHERE

Summer season and long-term drought increase the richness of bacteria and fungi in the foliar phyllosphere ofQuercus ilexin a mixed Mediterranean forest

(2012) J. Peñuelas et al.   PLANT BIOLOGY

Dynamics of Seed-Borne Rice Endophytes on Early Plant Growth Stages

(2012) Pablo R. Hardoim et al.   PLoS One

Performance of the enlarged Rice-FACE system using pure CO2 installed in Tsukuba, Japan

(2012) Hirofumi NAKAMURA et al.   JOURNAL OF AGRICULTURAL METEOROLOGY

Rhizosphere competent Pantoea agglomerans enhances maize (Zea mays) and chickpea (Cicer arietinum L.) growth, without altering the rhizosphere functional diversity

(2011) Aradhana Mishra et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets

(2011) Johan Bengtsson et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Phyllosphere bacterial communities of trichome-bearing and trichomeless Arabidopsis thaliana leaves

(2011) Eva E. Reisberg et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Geographical Location Determines the Population Structure in Phyllosphere Microbial Communities of a Salt-Excreting Desert Tree

(2011) Omri M. Finkel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Changes in spinach phylloepiphytic bacteria communities following minimal processing and refrigerated storage described using pyrosequencing of 16S rRNA amplicons

(2011) G. Lopez-Velasco et al.   JOURNAL OF APPLIED MICROBIOLOGY

Functional Characteristics of an Endophyte Community Colonizing Rice Roots as Revealed by Metagenomic Analysis

(2011) A. Sessitsch et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Microbe-Free Plant: Fact or Artifact?

(2011) Laila P. Partida-Martínez et al.   Frontiers in Plant Science

Microbes do not follow the elevational diversity patterns of plants and animals

(2010) Noah Fierer et al.   ECOLOGY

Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2

(2010) Zhili He et al.   ECOLOGY LETTERS

The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves

(2010) Amanda J. Redford et al.   ENVIRONMENTAL MICROBIOLOGY

V-Xtractor: An open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences

(2010) Martin Hartmann et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Maize Leaf Epiphytic Bacteria Diversity Patterns Are Genetically Correlated with Resistance to Fungal Pathogen Infection

(2010) Peter Balint-Kurti et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Soil Microbial Community Responses to Multiple Experimental Climate Change Drivers

(2009) H. F. Castro et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial Succession on the Leaf Surface: A Novel System for Studying Successional Dynamics

(2009) Amanda J. Redford et al.   MICROBIAL ECOLOGY

The versatility and adaptation of bacteria from the genus Stenotrophomonas

(2009) Robert P. Ryan et al.   NATURE REVIEWS MICROBIOLOGY

Community proteogenomics reveals insights into the physiology of phyllosphere bacteria

(2009) N. Delmotte et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assessment of 10 years of CO2 fumigation on soil microbial communities and function in a sweetgum plantation

(2009) Emily E. Austin et al.   SOIL BIOLOGY & BIOCHEMISTRY

Characterization of 1-aminocyclopropane-1-carboxylate deaminase producing methylobacteria from phyllosphere of rice and their role in ethylene regulation

(2009) C. Chinnadurai et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Genome Survey and Characterization of Endophytic Bacteria Exhibiting a Beneficial Effect on Growth and Development of Poplar Trees

(2008) S. Taghavi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nitrogen fixation by phyllosphere bacteria associated with higher plants and their colonizing epiphytes of a tropical lowland rainforest of Costa Rica

(2008) Michael Fürnkranz et al.   ISME Journal

Phyllosphere microbiology with special reference to diversity and plant genotype

(2008) J.M. Whipps et al.   JOURNAL OF APPLIED MICROBIOLOGY

Endophytic Bacteria in the Rice Plant

(2008) Hironobu Mano et al.   MICROBES AND ENVIRONMENTS

FACE-ing the facts: inconsistencies and interdependence among field, chamber and modeling studies of elevated [CO2] impacts on crop yield and food supply

(2008) Elizabeth A. Ainsworth et al.   NEW PHYTOLOGIST

Control of rice sheath blight by phyllosphere epiphytic microbial antagonists

(2008) D. M. De Costa et al.   PHYTOPARASITICA

The influence of sex, handedness, and washing on the diversity of hand surface bacteria

(2008) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing

(2008) Susan M. Huse et al.   PLoS Genetics