Article
Soil Science
Li Xiong, Xiaoyu Liu, Giovanni Vinci, Baobao Sun, Marios Drosos, Lianqing Li, Alessandro Piccolo, Genxing Pan
Summary: The study explored the impact of climate change on soil fertility and ecosystem functioning by analyzing the molecular composition of soil organic matter at different aggregate scales. Results showed significant changes in the mass proportion and molecular composition of aggregates under different climate treatments, highlighting the relationship between root biomass and macroaggregates, as well as the variation in SOM composition with decreasing aggregate size. Additionally, the study found that the distribution of common molecules among aggregates played a crucial role in modifying SOM composition under climatic treatments.
SOIL BIOLOGY & BIOCHEMISTRY
(2021)
Article
Plant Sciences
Yajiao Wang, Shuping Tian, Nan Wu, Wenwen Liu, Li Li, Xifeng Wang
Summary: Southwest China has diverse topography in rice-growing regions, leading to differences in microbial diversity and functionality in paddy soils. These differences affect the incidence of rice bacterial diseases. The dominant microbial genera and environmental factors vary between Chengdu and Guiyang, leading to different disease patterns.
Article
Fisheries
Chunmei Zhang, Wujuan Mi, Yuanzhao Xu, Wenzong Zhou, Yonghong Bi
Summary: This study investigated microbial communities, diversity, and function in paddy soil under the integrated rice-crayfish culture (IRCC) mode. It found that long-term IRCC significantly altered microbial communities and functions, while reducing microbial diversity in paddy soil. A resting period is recommended to ensure the sustainable development of ecological agriculture in paddy fields.
AQUACULTURE REPORTS
(2023)
Article
Soil Science
Zhiwei Liu, Xiuxia Liu, Xiulan Wu, Rongjun Bian, Xiaoyu Liu, Jufeng Zheng, Xuhui Zhang, Kun Cheng, Lianqing Li, Genxing Pan
Summary: Soil microbial necromass plays a critical role in soil organic carbon (SOC) sequestration, with elevated CO2 increasing fungal-derived C and warming increasing bacterial-derived C in SOC. The combination of elevated CO2 and warming resulted in the highest total microbial necromass and SOC accumulation, with root biomass indirectly affecting total amino sugar concentration through increased microbial biomass. Further research involving multiple sampling times is needed to understand the temporal dynamics of these properties.
BIOLOGY AND FERTILITY OF SOILS
(2021)
Article
Soil Science
Haiyang Yu, Guangbin Zhang, Jing Ma, Tianyu Wang, Kaifu Song, Qiong Huang, Chunwu Zhu, Qian Jiang, Jianguo Zhu, Hua Xu
Summary: This study investigated the effects of elevated CO2 (eCO2) and different rice cultivars on CH4 and N2O emissions in Chinese subtropical rice systems. The results showed that eCO2 increased rice yield and decreased CH4 and N2O emissions. The strongly responsive cultivars had lower emissions and were associated with higher soil Eh and [O-2] levels.
Article
Environmental Sciences
Zijian Qiu, Xinhua He, Haiyang Yu, Chunwu Zhu, Weishou Shen
Summary: The effects of elevated CO2 (eCO2) on paddy soil microbial communities are unclear, especially in different rice cultivars. This study compared the responses of soil bacterial communities to eCO2 and ambient CO2 (aCO2) in two weakly CO2-responsive and two strongly CO2-responsive rice cultivars. The results showed that eCO2 increased differences in bacterial diversity and had positive impacts on soil organic carbon and bacterial abundances. However, eCO2 did not significantly affect the relationship between bacterial diversity and rice yields.
SCIENCE OF THE TOTAL ENVIRONMENT
(2023)
Article
Plant Sciences
Bo Gao, Shaowu Hu, Liquan Jing, Xichao Niu, Yunxia Wang, Jianguo Zhu, Yulong Wang, Lianxin Yang
Summary: The study found that elevated CO2 levels significantly increased rice grain yield, especially when no leaf or spikelet removal was performed. The increase in grain yield was associated with an increase in panicle number and fully-filled grain percentage (FGP).
FRONTIERS IN PLANT SCIENCE
(2021)
Article
Green & Sustainable Science & Technology
Xingchen Huang, Hong Wang, Yuning Zou, Cece Qiao, Bing Hao, Qingqin Shao, Wenge Wu, Hua Wu, Jianrong Zhao, Lantian Ren
Summary: This study investigated the effects of different proportions of straw compost as a replacement for chemical fertilizer on soil microorganisms, rice growth yield, and quality. Results showed that substituting 10% of chemical fertilizer with compost had the best effect on increasing rice yield. This treatment increased microbial diversity and improved various rice quality parameters.
Article
Agronomy
Yandong Lv, Lingqi Xu, Xiaohong Guo, Jiajun Liu, Bing Zou, Yukun Guo, Yanfei Zhang, Hongyu Li, Guiping Zheng, Yongxia Guo, Minghui Zhao
Summary: The effects of biochar application on dry direct-seeded rice paddies were studied over 3 consecutive years. The results showed that biochar increased the stability of soil aggregates and improved the nutrient content in the soil. It also had a significant impact on the composition and richness of soil bacterial communities. Overall, applying biochar in dry direct-seeded rice cultivation can promote soil nutrient conversion, improve soil fertility, and contribute to low-carbon agriculture.
Article
Environmental Sciences
Haiyang Yu, Guangbin Zhang, Longlong Xia, Qiong Huang, Jing Ma, Chunwu Zhu, Jun Shan, Qian Jiang, Jianguo Zhu, Pete Smith, Xiaoyuan Yan, Hua Xu
Summary: Experimental results and meta-analysis suggest that long-term elevated atmospheric carbon dioxide (eCO2) may decrease methane (CH4) and nitrous oxide (N2O) emissions from rice paddies, contrasting with the short-term stimulatory effect of eCO2. The impact of eCO2 on greenhouse gas emissions changes over time and should be considered in future climate change research.
SCIENCE OF THE TOTAL ENVIRONMENT
(2022)
Article
Soil Science
Hyun-Jin Park, Woo-Jung Choi
Summary: The chemistry of rice residues may impact the temperature sensitivity of microbial respiration in paddy soils, but the effects of climate change on residue chemistry and its influence on respiration sensitivity remain unclear.
BIOLOGY AND FERTILITY OF SOILS
(2023)
Article
Ecology
Xiang Yang, Weiqi Wang, Xiaoxuan Chen, Jordi Sardans, Chun Wang, Tony Vancov, Yunying Fang, Shujun Wang, Xiangzhou Yuan, Joan Llusia, Akash Tariq, Fanjiang Zeng, Abdulwahed Fahad Alrefaei, Josep Penuelas
Summary: This study investigates the short-term effects of adding different rates of nitrogen-enriched biochar to rice paddy soils in subtropical regions. The results show that the application of moderate doses of nitrogen-enriched biochar can increase rice yield, reduce methane emissions, and increase soil cumulative carbon emissions by inducing changes in plant growth characteristics and soil bacterial communities.
EUROPEAN JOURNAL OF SOIL BIOLOGY
(2022)
Article
Plant Sciences
Bo Gao, Shaowu Hu, Liquan Jing, Yunxia Wang, Jianguo Zhu, Kai Wang, Hongyang Li, Xingxing Sun, Yulong Wang, Lianxin Yang
Summary: The impact of elevated CO2 on rice quality was studied, showing a decrease in processing suitability, appearance, and nutritional quality but an improvement in eating quality. Responses to nutritional quality were similar in different grain positions (brown and milled rice). The effects of eCO2 on rice quality varied little with different growing seasons, source-sink ratios, or grain positions.
FRONTIERS IN PLANT SCIENCE
(2021)
Article
Agronomy
Shaowu Hu, Kaicheng Tong, Wang Chen, Yunxia Wang, Yulong Wang, Lianxin Yang
Summary: Compared with growth and yield, little attention has been paid to the impact of elevated CO2 on rice grain quality. However, elevated CO2 concentration has significant effects on the quality of rice grains, leading to decreased head rice percentage and increased chalky grain percentage. Nevertheless, it improves the cooking and eating quality. Additionally, the nutritional value of rice is reduced under elevated CO2 conditions.
FIELD CROPS RESEARCH
(2022)
Article
Environmental Sciences
Guoyou Zhang, Kazuhiro Ujiie, Mayumi Yoshimoto, Hidemitsu Sakai, Takeshi Tokida, Yasuhiro Usui, Hitomi Wakatsuki, Miwa Arai, Hiroki Ikawa, Hirofumi Nakamaura, Toshihiro Hasegawa
Summary: The study revealed a negative interaction between elevated CO2 levels and short-term high temperatures on crop yield and quality. Elevated CO2 initially had positive effects on crop photosynthesis, but these benefits were reduced by high temperatures, leading to decreased grain setting and poor grain appearance quality. Adaptation measures against heat stress during reproductive and grain-filling periods are essential to mitigate the negative impacts of climate change on crop production.
ENVIRONMENTAL RESEARCH LETTERS
(2022)
Article
Agronomy
Pingshan Fan, Chaoyuan Lai, Jinming Yang, Shan Hong, Yue Yang, Qing Wang, Beibei Wang, Rongping Zhang, Zhongjun Jia, Yan Zhao, Yunze Ruan
Summary: Crop rotation is an effective strategy to reduce the incidence of Fusarium wilt and increase banana yields. It also leads to changes in the composition of soil microbial community, with increased bacterial richness and decreased relative abundance of Proteobacteria. Soil pH, organic matter, and available phosphorus are the main factors affecting microbial community composition.
ARCHIVES OF AGRONOMY AND SOIL SCIENCE
(2022)
Article
Environmental Sciences
S. Fan, J. Qin, H. Sun, Z. Jia, Y. Chen
Summary: This study found that the Zoige alpine wetland is severely affected by drought and degradation, with varying microbial communities in soils with different moisture content. Soil microbial richness and diversity were highest in wetland soils and lowest in transitional soils experiencing aridification, indicating the sensitivity of microbial diversity to changing moisture conditions in the wetland ecosystem.
INTERNATIONAL JOURNAL OF ENVIRONMENTAL SCIENCE AND TECHNOLOGY
(2022)
Article
Soil Science
Weiwei Xia, Saman Bowatte, Zhongjun Jia, Paul Newton
Summary: In low nitrogen environments, archaeal-dominated nitrification can offset N2O emissions by increasing soil organic carbon, while in high nitrogen environments, bacterial-dominated nitrification cannot sustain offsetting N2O emissions.
SOIL BIOLOGY & BIOCHEMISTRY
(2022)
Article
Environmental Sciences
Jiaqi Wang, Xiangwu Yao, Zhongjun Jia, Lizhong Zhu, Ping Zheng, Boran Kartal, Baolan Hu
Summary: This study investigated the influence of nitrogen input on the abundance and activity of denitrifying methanotrophs. The results showed that nitrogen input increased the abundance of these microorganisms and enhanced their contribution to methane emission reduction.
ENVIRONMENTAL POLLUTION
(2022)
Article
Soil Science
Nasrin Sultana, Jun Zhao, Yuanfeng Cai, G. K. M. Mustafizur Rahman, Mohammad Saiful Alam, Mohammad Faheem, Adrian Ho, Zhongjun Jia
Summary: Biological methane oxidation is a crucial process in the global carbon cycle that reduces methane emissions. This study found that soil organic carbon accumulation is associated with microbial methane oxidation, with 23.6%-60.0% of methane being converted to soil organic carbon. The results suggest that methanotrophs play an important role in soil organic matter accumulation.
Article
Soil Science
Wei Gao, Lianfeng Wang, Zhongjun Jia
Summary: This study found significant N2 fixation during heterotrophic respiration of carbon-rich glucose, and this fixation was closely associated with the response of soil microbiome and soil respiration. However, only a small portion of soil microbiome could respond quickly to the amendment of readily accessible organic C, highlighting the important roles of rare phylotypes in catalyzing soil C and nitrogen turnovers.
Article
Microbiology
Jing Cui, Meng Zhang, Linxia Chen, Shaohua Zhang, Ying Luo, Weiwei Cao, Ji Zhao, Lixin Wang, Zhongjun Jia, Zhihua Bao
Summary: Root-associated aerobic methanotroph plays an important role in reducing methane emissions from wetlands. This study examined the nitrogen-fixing activity and bacterial communities on the roots of two plant species. The results showed that methane oxidation enhanced nitrogen fixation in the roots, and different plant species had different nitrogen-fixing bacterial communities.
FRONTIERS IN MICROBIOLOGY
(2022)
Article
Microbiology
Weiwei Cao, Yuanfeng Cai, Zhihua Bao, Shuwei Wang, Xiaoyuan Yan, Zhongjun Jia
Summary: The bioavailability of nitrogen for rice growth is constrained by primary productivity, and this study shows that methane oxidation triggers nitrogen fixation in rice roots, with methanotrophs playing a vital role in carbon and nitrogen turnover. The results highlight the significance of root-associated methanotrophs in providing bioavailable nitrogen for rice growth and their role as microbial engines of nutrient cycling.
FRONTIERS IN MICROBIOLOGY
(2022)
Article
Microbiology
Yuanfeng Cai, Juanli Yun, Zhongjun Jia
Summary: We reconstructed the nearly complete genome of a Beijerinckiaceae methanotroph labeled as MO3_YZ.1 and found its close relationship with MO3 lineage and Methylocapsa based on phylogeny analysis. The MO3_YZ.1 strain has multiple metabolic pathways, including serine cycle for carbon assimilation and glyoxylate shunt for glyoxylate regeneration, as well as the potential ability to utilize acetate.
Article
Agronomy
Lei Wang, Da-Cheng Hao, Sisi Fan, Hongtu Xie, Xuelian Bao, Zhongjun Jia, Lianfeng Wang
Summary: Soil moisture plays a crucial role in microbial properties and N2O production. This study investigated the effects of previous and current moisture on N2O emission and nitrification/denitrification in agricultural soils. The results showed that the bacterial community composition and abundance of nitrification/denitrification genes were influenced by the antecedent moisture and dry-wet cycle. Specific bacterial genera were found to be correlated with soil physicochemical properties and N2O emission. High moisture levels were found to enhance both nitrifier denitrification and heterotrophic denitrification. These findings provide important insights into the impact of water regimes on N2O emission, soil fertility, and the global environment.
Article
Soil Science
Yufang Wang, Yuanfeng Cai, Fujiang Hou, Zhongjun Jia, Saman Bowatte
Summary: Animal grazing can impact the activity and diversity of methanotrophic communities in grassland soils. This study found that increasing grazing intensity can increase methane oxidation rate and methanotroph abundance in soils, but the effects are weaker at moderate grazing levels. Under high methane concentrations, high grazing intensity can lead to differences in methanotroph community composition and abundance.
APPLIED SOIL ECOLOGY
(2022)
Article
Soil Science
Xiangxin Sun, Jun Zhao, Qicheng Bei, Weiwei Xia, Xue Zhou, Bingzi Zhao, Jiabao Zhang, Zhongjun Jia
Summary: This study reveals the genomic adaptations of nitrite-oxidizing bacteria (NOB) in a saline-sodic soil. Two new genomes of NOB were identified and their adaptation strategies for salt tolerance were discovered. Additionally, different soil NOB phylotypes showed niche differentiation based on their salt adaptation features.
BIOLOGY AND FERTILITY OF SOILS
(2022)
Review
Environmental Sciences
Jean Damascene Harindintwali, Leilei Xiang, Fang Wang, Scott X. Chang, Zhiliang Zhao, Zhi Mei, Zhongjun Jia, Xin Jiang, Yong-guan Zhu, James M. Tiedje
Summary: The extensive use of organic chemicals has led to the distribution of hydrocarbon contaminants in many ecosystems worldwide. Bacteria and archaea play a dominant role in transforming these contaminants into methane through a syntrophic process. The resulting methane is then oxidized by anaerobic bacteria and archaea in the presence of electron acceptors, contributing to the reduction of methane emissions and climate change mitigation. However, the specific pathways and syntrophic partners involved in this process are still poorly understood.
CRITICAL REVIEWS IN ENVIRONMENTAL SCIENCE AND TECHNOLOGY
(2023)
Article
Ecology
Gaidi Ren, Guangfei Wang, Dejie Guo, Chao Lu, Yan Ma
Summary: This study investigates the influence of different sugars on soil-borne pathogens, microbiome structure, and microbial interactions. The results show that all sugars can enrich the pathogen and alter the bacterial community structure. Sugar supplementation promotes microbial interactions and may facilitate pathogen proliferation.
SOIL ECOLOGY LETTERS
(2023)
Article
Biotechnology & Applied Microbiology
Juan Tapia, Alex Duenas, Nick Cheje, Gonzalo Soclle, Nila Patino, Wendy Ancalla, Sara Tenorio, Jorge Denos, Homar Taco, Weiwei Cao, Diogo A. M. Alexandrino, Zhongjun Jia, Vitor Vasconcelos, Maria de Fatima Carvalho, Antonio Lazarte
Summary: The study demonstrated that an acidophilic iron-oxidizing bacterial consortium enriched from a gold mine in Peru has a high efficiency in recovering copper and zinc from printed circuit boards residues.
BIOENGINEERING-BASEL
(2022)