footprintDB: a database of transcription factors with annotated cis elements and binding interfaces
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Title
footprintDB: a database of transcription factors with annotated cis elements and binding interfaces
Authors
Keywords
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Journal
BIOINFORMATICS
Volume 30, Issue 2, Pages 258-265
Publisher
Oxford University Press (OUP)
Online
2013-11-15
DOI
10.1093/bioinformatics/btt663
References
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Related references
Note: Only part of the references are listed.- DNA-Binding Specificities of Human Transcription Factors
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- The MAPPER2 Database: a multi-genome catalog of putative transcription factor binding sites
- (2011) A. Riva NUCLEIC ACIDS RESEARCH
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- (2011) M. Punta et al. NUCLEIC ACIDS RESEARCH
- HMMER web server: interactive sequence similarity searching
- (2011) R. D. Finn et al. NUCLEIC ACIDS RESEARCH
- Direct inference of protein-DNA interactions using compressed sensing methods
- (2011) M. AlQuraishi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions
- (2010) K. Robasky et al. NUCLEIC ACIDS RESEARCH
- A census of human transcription factors: function, expression and evolution
- (2009) Juan M. Vaquerizas et al. NATURE REVIEWS GENETICS
- 3D-footprint: a database for the structural analysis of protein–DNA complexes
- (2009) Bruno Contreras-Moreira NUCLEIC ACIDS RESEARCH
- JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
- (2009) Elodie Portales-Casamar et al. NUCLEIC ACIDS RESEARCH
- Comparison of DNA binding across protein superfamilies
- (2009) Bruno Contreras-Moreira et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Analysis of Homeodomain Specificities Allows the Family-wide Prediction of Preferred Recognition Sites
- (2008) Marcus B. Noyes et al. CELL
- AthaMap, integrating transcriptional and post-transcriptional data
- (2008) L. Bulow et al. NUCLEIC ACIDS RESEARCH
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