标题
RSAT 2015: Regulatory Sequence Analysis Tools
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume 43, Issue W1, Pages W50-W56
出版商
Oxford University Press (OUP)
发表日期
2015-04-23
DOI
10.1093/nar/gkv362
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- footprintDB: a database of transcription factors with annotated cis elements and binding interfaces
- (2013) Alvaro Sebastian et al. BIOINFORMATICS
- Ensembl Genomes 2013: scaling up access to genome-wide data
- (2013) Paul Julian Kersey et al. NUCLEIC ACIDS RESEARCH
- The NHGRI GWAS Catalog, a curated resource of SNP-trait associations
- (2013) Danielle Welter et al. NUCLEIC ACIDS RESEARCH
- JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles
- (2013) Anthony Mathelier et al. NUCLEIC ACIDS RESEARCH
- Genic and nongenic contributions to natural variation of quantitative traits in maize
- (2012) X. Li et al. GENOME RESEARCH
- A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs
- (2012) Morgane Thomas-Chollier et al. Nature Protocols
- RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
- (2012) Heladia Salgado et al. NUCLEIC ACIDS RESEARCH
- Systematic Localization of Common Disease-Associated Variation in Regulatory DNA
- (2012) M. T. Maurano et al. SCIENCE
- Theoretical and empirical quality assessment of transcription factor-binding motifs
- (2011) Alejandra Medina-Rivera et al. NUCLEIC ACIDS RESEARCH
- Unraveling networks of co-regulated genes on the sole basis of genome sequences
- (2011) Sylvain Brohée et al. NUCLEIC ACIDS RESEARCH
- RSAT 2011: regulatory sequence analysis tools
- (2011) M. Thomas-Chollier et al. NUCLEIC ACIDS RESEARCH
- RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets
- (2011) Morgane Thomas-Chollier et al. NUCLEIC ACIDS RESEARCH
- Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
- (2010) Jeremy Goecks et al. GENOME BIOLOGY
- Retrieve-ensembl-seq: user-friendly and large-scale retrieval of single or multi-genome sequences from Ensembl
- (2009) O. Sand et al. BIOINFORMATICS
- MEME SUITE: tools for motif discovery and searching
- (2009) T. L. Bailey et al. NUCLEIC ACIDS RESEARCH
- Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution
- (2008) Rekin's Janky et al. BMC BIOINFORMATICS
- Analyzing multiple data sets by interconnecting RSAT programs via SOAP Web services—an example with ChIP-chip data
- (2008) Olivier Sand et al. Nature Protocols
- Network Analysis Tools: from biological networks to clusters and pathways
- (2008) Sylvain Brohée et al. Nature Protocols
- Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules
- (2008) Jean-Valery Turatsinze et al. Nature Protocols
- Using RSAT oligo-analysis and dyad-analysis tools to discover regulatory signals in nucleic sequences
- (2008) Matthieu Defrance et al. Nature Protocols
- RSAT: regulatory sequence analysis tools
- (2008) M. Thomas-Chollier et al. NUCLEIC ACIDS RESEARCH
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