The head-regeneration transcriptome of the planarian Schmidtea mediterranea

Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea

(2011) Josep F Abril et al.   BMC GENOMICS

Planarian stem cells: a simple paradigm for regeneration

(2011) A. Aziz Aboobaker   TRENDS IN CELL BIOLOGY

Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon

(2010) Shawn T O'Neil et al.   BMC GENOMICS

Egr-1—A Ca2+-regulated transcription factor

(2010) Gerald Thiel et al.   CELL CALCIUM

Evolution and regeneration of the planarian central nervous system

(2010) Yoshihiko Umesono et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Planarian regeneration involves distinct stem cell responses to wounds and tissue absence

(2010) Danielle Wenemoser et al.   DEVELOPMENTAL BIOLOGY

Scaffolding a Caenorhabditis nematode genome with RNA-seq

(2010) A. Mortazavi et al.   GENOME RESEARCH

Transcription Factor Egr-1 Is Essential for Maximal Matrix Metalloproteinase-9 Transcription by Tumor Necrosis Factor  

(2010) S. Y. Shin et al.   MOLECULAR CANCER RESEARCH

A Dual Platform Approach to Transcript Discovery for the Planarian Schmidtea Mediterranea to Establish RNAseq for Stem Cell and Regeneration Biology

(2010) Martin J. Blythe et al.   PLoS One

Genome-Wide Analyses Reveal a Role for Peptide Hormones in Planarian Germline Development

(2010) James J. Collins et al.   PLOS BIOLOGY

The TALE Class Homeobox Gene Smed-prep Defines the Anterior Compartment for Head Regeneration

(2010) Daniel A. Felix et al.   PLoS Genetics

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Early growth response transcription factors and the modulation of immune response

(2009) Diana Gómez-Martín et al.   AUTOIMMUNITY REVIEWS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Smed-Evi/Wntless is required for  -catenin-dependent and -independent processes during planarian regeneration

(2009) T. Adell et al.   DEVELOPMENT

Long-range neural and gap junction protein-mediated cues control polarity during planarian regeneration

(2009) Néstor J. Oviedo et al.   DEVELOPMENTAL BIOLOGY

The genome of the blood fluke Schistosoma mansoni

(2009) Matthew Berriman et al.   NATURE

High-resolution profiling and discovery of planarian small RNAs

(2009) Marc R. Friedländer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A wound-induced Wnt expression program controls planarian regeneration polarity

(2009) C. P. Petersen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Roles of TRAF molecules in B lymphocyte function

(2008) Ping Xie et al.   CYTOKINE & GROWTH FACTOR REVIEWS

Silencing of Smed- catenin1 generates radial-like hypercephalized planarians

(2008) M. Iglesias et al.   DEVELOPMENT

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Effects of hypoxia on transcription factor expression in human monocytes and macrophages

(2008) Laila Elbarghati et al.   IMMUNOBIOLOGY

 -Catenin Defines Head Versus Tail Identity During Planarian Regeneration and Homeostasis

(2007) K. A. Gurley et al.   SCIENCE