CATH FunFHMMer web server: protein functional annotations using functional family assignments

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

CATH: comprehensive structural and functional annotations for genome sequences

(2014) Ian Sillitoe et al.   NUCLEIC ACIDS RESEARCH

Functional site plasticity in domain superfamilies

(2013) Benoit H. Dessailly et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Bioinformatics analysis of the epitope regions for norovirus capsid protein

(2013) Liping Chen et al.   BMC BIOINFORMATICS

A large-scale evaluation of computational protein function prediction

(2013) Predrag Radivojac et al.   NATURE METHODS

Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis

(2013) Jonathan G. Lees et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Quality of Computationally Inferred Gene Ontology Annotations

(2012) Nives Škunca et al.   PLoS Computational Biology

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

A fast and automated solution for accurately resolving protein domain architectures

(2010) Corin Yeats et al.   BIOINFORMATICS

Exploiting structural classifications for function prediction: towards a domain grammar for protein function

(2009) Benoît H Dessailly et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

GeMMA: functional subfamily classification within superfamilies of predicted protein structural domains

(2009) David A. Lee et al.   NUCLEIC ACIDS RESEARCH

The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function

(2008) Marco Punta et al.   PLoS Computational Biology