SomamiR 2.0: a database of cancer somatic mutations altering microRNA–ceRNA interactions

miR2GO: comparative functional analysis for microRNAs: Fig. 1.

(2015) Anindya Bhattacharya et al.   BIOINFORMATICS

Circular RNA: A new star of noncoding RNAs

(2015) Shibin Qu et al.   CANCER LETTERS

Long non-coding RNA Fer-1-like protein 4 suppresses oncogenesis and exhibits prognostic value by associating with miR-106a-5p in colon cancer

(2015) Ben Yue et al.   CANCER SCIENCE

Knowledge-based analysis of functional impacts of mutations in microRNA seed regions

(2015) Anindya Bhattacharya et al.   JOURNAL OF BIOSCIENCES

Long non-coding RNA MEG3 functions as a competing endogenous RNA to regulate gastric cancer progression

(2015) Weizhao Peng et al.   JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH

Competing endogenous RNA networks: tying the essential knots for cancer biology and therapeutics

(2015) Avencia Sanchez-Mejias et al.   Journal of Hematology & Oncology

The mRNA related ceRNA–ceRNA landscape and significance across 20 major cancer types

(2015) Juan Xu et al.   NUCLEIC ACIDS RESEARCH

Oncocers: ceRNA-mediated cross-talk by sponging miRNAs in oncogenic pathways

(2015) Sercan Ergun et al.   TUMOR BIOLOGY

In silico mapping of polymorphic miRNA–mRNA interactions in autoimmune thyroid diseases

(2014) Yan Cui   AUTOIMMUNITY

Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer

(2014) Paola Paci et al.   BMC Systems Biology

Abstract 5609: Bortezomib enhanced cytotoxic effects of novel sTRAIL-targeted nanocarriers against neuroectodermal tumors .

(2014) Monica Loi et al.   CANCER RESEARCH

Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks

(2014) Hua-Sheng Chiu et al.   GENOME RESEARCH

The multilayered complexity of ceRNA crosstalk and competition

(2014) Yvonne Tay et al.   NATURE

Mapping the miRNA interactome by cross-linking ligation and sequencing of hybrids (CLASH)

(2014) Aleksandra Helwak et al.   Nature Protocols

Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis

(2014) Michael J Moore et al.   Nature Protocols

COSMIC: exploring the world's knowledge of somatic mutations in human cancer

(2014) Simon A. Forbes et al.   NUCLEIC ACIDS RESEARCH

An update on LNCipedia: a database for annotated human lncRNA sequences

(2014) Pieter-Jan Volders et al.   NUCLEIC ACIDS RESEARCH

Functional and Evolutionary Significance of Human MicroRNA Seed Region Mutations

(2014) Christopher G. Hill et al.   PLoS One

circBase: a database for circular RNAs

(2014) Petar Glažar et al.   RNA

Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding

(2013) Aleksandra Helwak et al.   CELL

Prioritization of Genetic Variants in the microRNA Regulome as Functional Candidates in Genome-Wide Association Studies

(2013) Brendan Bulik-Sullivan et al.   HUMAN MUTATION

Natural RNA circles function as efficient microRNA sponges

(2013) Thomas B. Hansen et al.   NATURE

Circular RNAs are a large class of animal RNAs with regulatory potency

(2013) Sebastian Memczak et al.   NATURE

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data

(2013) Jun-Hao Li et al.   NUCLEIC ACIDS RESEARCH

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways

(2013) Anindya Bhattacharya et al.   NUCLEIC ACIDS RESEARCH

The UCSC Genome Browser database: 2014 update

(2013) Donna Karolchik et al.   NUCLEIC ACIDS RESEARCH

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

ceRNA Cross-Talk in Cancer: When ce-bling Rivalries Go Awry

(2013) F. A. Karreth et al.   Cancer Discovery

Genetic Architecture of MicroRNA Expression: Implications for the Transcriptome and Complex Traits

(2012) Eric R. Gamazon et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genome-wide identification of miRNA targets by PAR-CLIP

(2012) Markus Hafner et al.   METHODS

Role of variations within microRNA-binding sites in cancer

(2012) D. Landi et al.   MUTAGENESIS

The Pediatric Cancer Genome Project

(2012) James R Downing et al.   NATURE GENETICS

SomamiR: a database for somatic mutations impacting microRNA function in cancer

(2012) Anindya Bhattacharya et al.   NUCLEIC ACIDS RESEARCH

Long non-coding RNAs and cancer: a new frontier of translational research?

(2012) R Spizzo et al.   ONCOGENE

Systematic Analysis of microRNA Targeting Impacted by Small Insertions and Deletions in Human Genome

(2012) Anindya Bhattacharya et al.   PLoS One

Integrative Analysis of Somatic Mutations Altering MicroRNA Targeting in Cancer Genomes

(2012) Jesse D. Ziebarth et al.   PLoS One

The sufficient minimal set of miRNA seed types

(2011) Daniel C. Ellwanger et al.   BIOINFORMATICS

An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma

(2011) Pavel Sumazin et al.   CELL

Coding-Independent Regulation of the Tumor Suppressor PTEN by Competing Endogenous mRNAs

(2011) Yvonne Tay et al.   CELL

A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?

(2011) Leonardo Salmena et al.   CELL

Cancer GAMAdb: database of cancer genetic associations from meta-analyses and genome-wide association studies

(2011) Sheri D Schully et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Molecular Mechanisms of Long Noncoding RNAs

(2011) Kevin C. Wang et al.   MOLECULAR CELL

Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs

(2011) David M Garcia et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits

(2011) J. D. Ziebarth et al.   NUCLEIC ACIDS RESEARCH

Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast

(2011) G. Kudla et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Long noncoding RNAs and human disease

(2011) Orly Wapinski et al.   TRENDS IN CELL BIOLOGY

The Emergence of lncRNAs in Cancer Biology

(2011) J. R. Prensner et al.   Cancer Discovery

Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP

(2010) Markus Hafner et al.   CELL

International network of cancer genome projects

(2010) Thomas J. Hudson (Chairperson) et al.   NATURE

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

HITS-CLIP: panoramic views of protein-RNA regulation in living cells

(2010) Robert B. Darnell   Wiley Interdisciplinary Reviews-RNA

Argonaute HITS-CLIP decodes microRNA–mRNA interaction maps

(2009) Sung Wook Chi et al.   NATURE

Mutations in the seed region of human miR-96 are responsible for nonsyndromic progressive hearing loss

(2009) Ángeles Mencía et al.   NATURE GENETICS

MicroRNA polymorphisms: the future of pharmacogenomics, molecular epidemiology and individualized medicine

(2009) Prasun J Mishra et al.   PHARMACOGENOMICS

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

(2009) L. A. Hindorff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA