Finding a Needle in a Haystack: The Role of Electrostatics in Target Lipid Recognition by PH Domains

The Binding Process of a Nonspecific Enzyme with DNA

(2011) Chuanying Chen et al.   BIOPHYSICAL JOURNAL

Effects of Macromolecular Crowding on the Inhibition of Virus Assembly and Virus-Cell Receptor Recognition

(2011) Verónica Rincón et al.   BIOPHYSICAL JOURNAL

Membrane protein sequestering by ionic protein–lipid interactions

(2011) Geert van den Bogaart et al.   NATURE

Membrane lipidome of an epithelial cell line

(2011) Julio L. Sampaio et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biophysical and Computational Studies of Membrane Penetration by the GRP1 Pleckstrin Homology Domain

(2011) Craig N. Lumb et al.   STRUCTURE

Cell Membranes: The Lipid Perspective

(2011) Ünal Coskun et al.   STRUCTURE

The Effect of Macromolecular Crowding, Ionic Strength and Calcium Binding on Calmodulin Dynamics

(2011) Qian Wang et al.   PLoS Computational Biology

Absolute Protein-Protein Association Rate Constants from Flexible, Coarse-Grained Brownian Dynamics Simulations: The Role of Intermolecular Hydrodynamic Interactions in Barnase-Barstar Association

(2010) Tamara Frembgen-Kesner et al.   BIOPHYSICAL JOURNAL

Single Molecule Diffusion of Membrane-Bound Proteins: Window into Lipid Contacts and Bilayer Dynamics

(2010) Jefferson D. Knight et al.   BIOPHYSICAL JOURNAL

Macromolecular crowding effects on protein–protein binding affinity and specificity

(2010) Young C. Kim et al.   JOURNAL OF CHEMICAL PHYSICS

Constructing smooth potentials of mean force, radial distribution functions, and probability densities from sampled data

(2010) Ramses van Zon et al.   JOURNAL OF CHEMICAL PHYSICS

Membrane/Toxin Interaction Energetics via Serial Multiscale Molecular Dynamics Simulations

(2010) Chze Ling Wee et al.   Journal of Chemical Theory and Computation

Translation of the phosphoinositide code by PI effectors

(2010) Tatiana G Kutateladze   Nature Chemical Biology

Crowding and hydrodynamic interactions likely dominate in vivo macromolecular motion

(2010) T. Ando et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diffusion, Crowding & Protein Stability in a Dynamic Molecular Model of the Bacterial Cytoplasm

(2010) Sean R. McGuffee et al.   PLoS Computational Biology

Ionization Properties of Phosphatidylinositol Polyphosphates in Mixed Model Membranes

(2009) Edgar E. Kooijman et al.   BIOCHEMISTRY

Association of Cytochrome c with Membrane-Bound Cytochrome c Oxidase Proceeds Parallel to the Membrane Rather Than in Bulk Solution

(2009) Alexander Spaar et al.   BIOPHYSICAL JOURNAL

An O(N2) approximation for hydrodynamic interactions in Brownian dynamics simulations

(2009) Tihamér Geyer et al.   JOURNAL OF CHEMICAL PHYSICS

Striking Effects of Hydrodynamic Interactions on the Simulated Diffusion and Folding of Proteins

(2009) Tamara Frembgen-Kesner et al.   Journal of Chemical Theory and Computation

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation

Molecular mechanism of membrane targeting by the GRP1 PH domain

(2008) Ju He et al.   JOURNAL OF LIPID RESEARCH

Membrane recognition by phospholipid-binding domains

(2008) Mark A. Lemmon   NATURE REVIEWS MOLECULAR CELL BIOLOGY

How DNA coiling enhances target localization by proteins

(2008) B. van den Broek et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Membrane Phosphatidylserine Regulates Surface Charge and Protein Localization

(2008) T. Yeung et al.   SCIENCE

Protein Diffusion on Charged Membranes: A Dynamic Mean-Field Model Describes Time Evolution and Lipid Reorganization

(2007) George Khelashvili et al.   BIOPHYSICAL JOURNAL