4.6 Article

Survival and Competitiveness of Bradyrhizobium japonicum Strains 20 Years after Introduction into Field Locations in Poland

Journal

APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Volume 81, Issue 16, Pages 5552-5559

Publisher

AMER SOC MICROBIOLOGY
DOI: 10.1128/AEM.01399-15

Keywords

-

Funding

  1. U.S. Agency for International Development [HRN-5600-G-00-2074-00]
  2. University of Minnesota Agricultural Experiment Station
  3. Poznan University of Life Sciences projects [508.181.03, 508.181.00]

Ask authors/readers for more resources

It was previously demonstrated that there are no indigenous strains of Bradyrhizobium japonicum forming nitrogen-fixing root nodule symbioses with soybean plants in arable field soils in Poland. However, bacteria currently classified within this species are present (together with Bradyrhizobium canariense) as indigenous populations of strains specific for nodulation of legumes in the Genisteae tribe. These rhizobia, infecting legumes such as lupins, are well established in Polish soils. The studies described here were based on soybean nodulation field experiments, established at the Poznan University of Life Sciences Experiment Station in Gorzyn, Poland, and initiated in the spring of 1994. Long-term research was then conducted in order to study the relation between B. japonicum USDA 110 and USDA 123, introduced together into the same location, where no soybean rhizobia were earlier detected, and nodulation and competitive success were followed over time. Here we report the extra-long-term saprophytic survival of B. japonicum strains nodulating soybeans that were introduced as inoculants 20 years earlier and where soybeans were not grown for the next 17 years. The strains remained viable and symbiotically competent, and molecular and immunochemical methods showed that the strains were undistinguishable from the original inoculum strains USDA 110 and USDA 123. We also show that the strains had balanced numbers and their mobility in soil was low. To our knowledge, this is the first report showing the extra-long-term persistence of soybean-nodulating strains introduced into Polish soils and the first analyzing the long-term competitive relations of USDA 110 and USDA 123 after the two strains, neither of which was native, were introduced into the environment almost 2 decades ago.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.6
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Environmental Sciences

Bioaugmentation with As-transforming bacteria improves arsenic availability and uptake by the hyperaccumulator plant Pteris vittata (L).

Reda A. Abou-Shanab, Cara M. Santelli, Michael J. Sadowsky

Summary: The study showed that certain soil bacteria can enhance the availability of arsenic in soil, thus increasing arsenic uptake by Pteris vittata plants. Specific bacterial strains significantly improved arsenic uptake by P. vittata, leading to higher bioconcentration factors and potential use in large-scale soil remediation.

INTERNATIONAL JOURNAL OF PHYTOREMEDIATION (2022)

Article Ecology

Evolution of rhizobial symbiosis islands through insertion sequence-mediated deletion and duplication

Haruka Arashida, Haruka Odake, Masayuki Sugawara, Ryota Noda, Kaori Kakizaki, Satoshi Ohkubo, Hisayuki Mitsui, Shusei Sato, Kiwamu Minamisawa

Summary: Symbiosis between organisms influences evolution through adaptive changes in genome architectures. Interactions between soybeans and Bradyrhizobium involve IS-mediated duplications and deletions on symbiosis islands, with host plants selecting mutualistic variants from the pool of rhizobial populations. Homologous recombination between direct IS copies provides a natural mechanism for generating deletions and duplications in symbiosis islands.

ISME JOURNAL (2022)

Article Geosciences, Multidisciplinary

Erosion and deposition divergently affect the structure of soil bacterial communities and functionality

Weibo Kong, Fuyuan Su, Qian Zhang, Satoshi Ishii, Michael J. Sadowsky, Samiran Banerjee, Mingan Shao, Liping Qiu, Xiaorong Wei

Summary: This study in the Loess Plateau of China reveals that soil erosion and deposition have significant impacts on bacterial communities and multifunctionality. Erosion reduces bacterial richness and multifunctionality, but deposition can alleviate these negative effects. The study suggests that sustainable soil management and restoration of degraded lands can benefit from understanding the interactions between erosion, deposition, bacterial communities, and soil multifunctionality.

CATENA (2022)

Article Environmental Sciences

Probable role of Cutibacterium acnes in the gut of the polychaete Capitella teleta

Jeonghwan Jang, Valery E. Forbes, Michael J. Sadowsky

Summary: This study discovered the presence of Cutibacterium acnes strains in the gut microbiota of the marine polychaete Capitella teleta. These strains produce propionate and vitamin B-12, which are essential microbial metabolites for the host. C. acnes, as a member of the worm's core functional microbiota, is likely favored by the host gut environment.

SCIENCE OF THE TOTAL ENVIRONMENT (2022)

Review Environmental Sciences

Minimizing errors in RT-PCR detection and quantification of SARS-CoV-2 RNA for wastewater surveillance

Warish Ahmed, Stuart L. Simpson, Paul M. Bertsch, Kyle Bibby, Aaron Bivins, Linda L. Blackall, Silvia Bofill-Mas, Albert Bosch, Joao Brandao, Phil M. Choi, Mark Ciesielski, Erica Donner, Nishita D'Souza, Andreas H. Farnleitner, Daniel Gerrity, Raul Gonzalez, John F. Griffith, Pradip Gyawali, Charles N. Haas, Kerry A. Hamilton, Hapuarachchige Chandithal Hapuarachchi, Valerie J. Harwood, Rehnuma Haque, Greg Jackson, Stuart J. Khan, Wesaal Khan, Masaaki Kitajima, Asja Korajkic, Giuseppina La Rosa, Blythe A. Layton, Erin Lipp, Sandra L. McLellan, Brian McMinn, Gertjan Medema, Suzanne Metcalfe, Wim G. Meijer, Jochen F. Mueller, Heather Murphy, Coleen C. Naughton, Rachel T. Noble, Sudhi Payyappat, Susan Petterson, Tarja Pitkanen, Veronica B. Rajal, Brandon Reyneke, Fernando A. Roman, Joan B. Rose, Marta Rusinol, Michael J. Sadowsky, Laura Sala-Comorera, Yin Xiang Setoh, Samendra P. Sherchan, Kwanrawee Sirikanchana, Wendy Smith, Joshua A. Steele, Rosalie Subburg, Erin M. Symonds, Phong Thai, Kevin Thomas, Josh Tynan, Simon Toze, Janelle Thompson, Andy S. Whiteley, Judith Chui Ching Wong, Daisuke Sano, Stefan Wuertz, Irene Xagoraraki, Qian Zhang, Amity G. Zimmer-Faust, Orin C. Shanks

Summary: Monitoring pathogens like SARS-CoV-2 in wastewater using RT-PCR is effective for public health information, but there is a lack of standardized protocols for wastewater surveillance. Key strategies for improving accuracy include QA/QC measures, representative sampling, virus concentration, and clear data interpretation guidelines.

SCIENCE OF THE TOTAL ENVIRONMENT (2022)

Article Environmental Sciences

Climate Change Impacts on Microbiota in Beach Sand and Water: Looking Ahead

Joao Brandao, Chelsea Weiskerger, Elisabete Valerio, Tarja Pitkanen, Paivi Merilainen, Lindsay Avolio, Christopher D. Heaney, Michael J. Sadowsky

Summary: Beach sand and water are both important for human health and their microbiology has been studied for decades. The World Health Organization recently recommended including recreational beach sands in monitoring for enterococci and Fungi. Global climate change is affecting beach microbial contamination, and the changing world and human travel contribute to the spread of endemic allochthonous microbiota. In the future, alternative microbial standards will be necessary to ensure the health of beach users from both sand and water contaminants.

INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH (2022)

Article Biodiversity Conservation

Composition and Potential Functions of Rhizobacterial Communities in a Pioneer Plant from Andean Altiplano

Qian Zhang, Macarena M. Araya, Marcia Astorga-Elo, Gabriela Velasquez, Joaquin I. Rilling, Marco Campos, Michael J. Sadowsky, Milko A. Jorquera, Jacquelinne J. Acuna

Summary: Plant microbiota associated with pioneer plants in the Central Volcanic Zone of Andes play a crucial role in their growth and adaptation to harsh conditions. This study analyzed the composition and potential functions of rhizobacteria in Parastrephia quadrangularis plants from three volcanoes in the Atacama Desert. The results showed that Actinobacteria, Proteobacteria, Acidobacteria, and Bacteroidetes were the most abundant phyla. Each plant recruited specific rhizobacterial communities independently of the volcano slope. The predicted functions mainly involved chemoheterotrophy, nitrogen cycling, and symbiosis.

DIVERSITY-BASEL (2022)

Article Veterinary Sciences

Different methods of eubiotic feed additive provision affect the health, performance, fermentation, and metabolic status of dairy calves during the preweaning period

Barbara Stefanska, Frank Katzer, Barbara Golinska, Patrycja Sobolewska, Sebastian Smulski, Andrzej Frankiewicz, Wlodzimierz Nowak

Summary: The addition of eubiotic feed additives into the milk replacer can improve the health, performance, ruminal fermentation, and biochemical blood indices in dairy calves during the preweaning period.

BMC VETERINARY RESEARCH (2022)

Article Nutrition & Dietetics

Differential hydrogen sulfide production by a human cohort in response to animal- and plant-based diet interventions

Levi Teigen, Prince P. Mathai, Sharon Lopez, Michael Matson, Baila Elkin, Daria Kozysa, Amanda J. Kabage, Matthew Hamilton, Byron P. Vaughn, Michael J. Sadowsky, Alexander Khoruts

Summary: This study aimed to determine the effect of short-term plant- and animal-based eating patterns on ex vivo fecal H2S production in healthy human volunteers. The results showed that compared to animal-based diet, plant-based diet resulted in lower H2S production in most healthy individuals, although there were substantial individual variations. Taxonomic differences were observed between responders and non-responders, suggesting potential individualized H2S responsiveness to diet.

CLINICAL NUTRITION (2022)

Article Biodiversity Conservation

Afforestation can lower microbial diversity and functionality in deep soil layers in a semiarid region

Weibo Kong, Xiaorong Wei, Yonghong Wu, Mingan Shao, Qian Zhang, Michael J. Sadowsky, Satoshi Ishii, Peter B. Reich, Gehong Wei, Shuo Jiao, Liping Qiu, Liling Liu

Summary: Afforestation can effectively rehabilitate degraded ecosystems, but it may deplete deep soil moisture, which in turn affects soil microbial community and functionality. This study found that afforestation significantly impacted soil bacterial community and functionality in a semi-arid region of China's Loess Plateau, particularly in the deep soil layers. Afforestation led to reduced bacterial diversity and functionality, increased sensitivity to changes in soil moisture, and decreased sustainability of the ecosystems. These negative impacts on deep soils are crucial for assessing the eco-environmental effects of afforestation and ensuring the sustainability of forest ecosystems in semi-arid and arid climates.

GLOBAL CHANGE BIOLOGY (2022)

Article Environmental Sciences

Halophytes increase rhizosphere microbial diversity, network complexity and function in inland saline ecosystem

Liping Qiu, Weibo Kong, Hansong Zhu, Qian Zhang, Samiran Banerjee, Satoshi Ishii, Michael J. Sadowsky, Jianlun Gao, Changzeng Feng, Jingjing Wang, Chunliang Chen, Tianhui Lu, Mingan Shao, Gehong Wei, Xiaorong Wei

Summary: This study investigated the diversity, composition, and co-occurrence networks of rhizosphere bacteria and fungi in six halophytes and bulk soils in a semiarid inland saline ecosystem. The results showed that the enhanced association between fungi and bacteria increased the complexity of microbial co-occurring networks in halophytic rhizosphere, contributing to higher microbial functions in this saline ecosystem.

SCIENCE OF THE TOTAL ENVIRONMENT (2022)

Article Materials Science, Textiles

Energy and Biomass Yield of Industrial Hemp (Cannabis sativa L.) as Influenced by Seeding Rate and Harvest Time in Polish Agro-Climatic Conditions

Jacek Kolodziej, Krzysztof Pudelko, Jerzy Mankowski

Summary: Energy produced directly from biomass, particularly industrial hemp, is considered a valuable alternative energy source due to its high potential energy yields and suitability for existing crop rotations. This study assessed the energetic value of hemp based on agrotechnical factors and demonstrated that harvesting at full flowering with a sowing rate of 30 kg/ha resulted in optimal energy production, yielding 14.65 tons/ha or 275.56 GJ/ha.

JOURNAL OF NATURAL FIBERS (2023)

Article Biochemistry & Molecular Biology

p-Cresol Sulfate Is a Sensitive Urinary Marker of Fecal Microbiota Transplantation and Antibiotics Treatments in Human Patients and Mouse Models

Yuyin Zhou, Zheting Bi, Matthew J. Hamilton, Li Zhang, Rui Su, Michael J. Sadowsky, Sabita Roy, Alexander Khoruts, Chi Chen

Summary: This study investigated the metabolic changes induced by FMT in rCDI patients through metabolomic analysis of urine samples. The results showed that the concentration of p-cresol sulfate in urine rapidly increased, making it a potential therapeutic indicator for the effectiveness of antibiotics and FMT.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2023)

Article Agronomy

Positive effects of plant diversity on dry matter yield while maintaining a high level of forage digestibility in intensively managed grasslands across two contrasting environments

Barbara Golinska, Rishabh Vishwakarma, Caroline Brophy, Piotr Golinski

Summary: The local abiotic and environmental conditions may influence the agricultural benefits of mixtures in comparison to pure stands. The effects of species interactions and environmental contrasts on yield and digestibility were investigated using different mixtures of grass, legume, and herb species. The study found that the benefits of species diversity were greater in less productive sites, leading to higher yields and increased yield stability. Sward digestibility did not differ significantly between mixtures and monocultures.

GRASS AND FORAGE SCIENCE (2023)

Review Microbiology

Impacts of biostimulation and bioaugmentation on woodchip bioreactor microbiomes

Hao Wang, Gary W. Feyereisen, Ping Wang, Carl Rosen, Michael J. Sadowsky, Satoshi Ishii

Summary: This study investigated the effects of bioaugmentation and biostimulation on the microbiomes and nitrate removal rates of woodchip bioreactors (WBRs). The results showed that introducing denitrifying bacteria and adding acetate can enhance the nitrate removal efficiency of WBRs. Additionally, the study found that denitrifiers are unevenly distributed in WBRs.

MICROBIOLOGY SPECTRUM (2023)

No Data Available