Cell type-specific responses to salinity - the epidermal bladder cell transcriptome ofMesembryanthemum crystallinum

The twins K+ and Na+ in plants

(2014) Begoña Benito et al.   JOURNAL OF PLANT PHYSIOLOGY

New insights into plant salt acclimation: the roles of vesicle trafficking and reactive oxygen species signalling in mitochondria and the endomembrane system

(2014) Jesus Garcia de la Garma et al.   NEW PHYTOLOGIST

Decreased capacity for sodium export out of Arabidopsis chloroplasts impairs salt tolerance, photosynthesis and plant performance

(2014) Maria Müller et al.   PLANT JOURNAL

Genome Structures and Transcriptomes Signify Niche Adaptation for the Multiple-Ion-Tolerant Extremophyte Schrenkiella parvula

(2014) D.-H. Oh et al.   PLANT PHYSIOLOGY

Engineering crassulacean acid metabolism to improve water-use efficiency

(2014) Anne M. Borland et al.   TRENDS IN PLANT SCIENCE

Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing

(2014) Xinpeng Qi et al.   Nature Communications

Learning from halophytes: physiological basis and strategies to improve abiotic stress tolerance in crops

(2013) Sergey Shabala   ANNALS OF BOTANY

Microgenomics: Genome-Scale, Cell-Specific Monitoring of Multiple Gene Regulation Tiers

(2013) J. Bailey-Serres   Annual Review of Plant Biology

Proteomic analysis ofMesembryanthemum crystallinumleaf microsomal fractions finds an imbalance in V-ATPase stoichiometry during the salt-induced transition from C3 to CAM

(2013) Cristian Cosentino et al.   BIOCHEMICAL JOURNAL

Optimizing de novo assembly of short-read RNA-seq data for phylogenomics

(2013) Ya Yang et al.   BMC GENOMICS

Control of glycerol biosynthesis under high salt stress in Arabidopsis

(2013) Ahmed Bahieldin et al.   FUNCTIONAL PLANT BIOLOGY

Differential Activity of Plasma and Vacuolar Membrane Transporters Contributes to Genotypic Differences in Salinity Tolerance in a Halophyte Species, Chenopodium quinoa

(2013) Edgar Bonales-Alatorre et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Towards understanding vacuolar antioxidant mechanisms: a role for fructans?

(2013) Darin Peshev et al.   JOURNAL OF EXPERIMENTAL BOTANY

Sodium in plants: perception, signalling, and regulation of sodium fluxes

(2013) Frans J. M. Maathuis   JOURNAL OF EXPERIMENTAL BOTANY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Poplar calcineurin B-like proteins PtCBL10A and PtCBL10B regulate shoot salt tolerance through interaction with PtSOS2 in the vacuolar membrane

(2013) REN-JIE TANG et al.   PLANT CELL AND ENVIRONMENT

Calcineurin B-like protein CBL10 directly interacts with AKT1 and modulates K+homeostasis in Arabidopsis

(2013) Xiao-Ling Ren et al.   PLANT JOURNAL

Reduced Tonoplast Fast-Activating and Slow-Activating Channel Activity Is Essential for Conferring Salinity Tolerance in a Facultative Halophyte, Quinoa

(2013) E. Bonales-Alatorre et al.   PLANT PHYSIOLOGY

Elucidation of salt stress defense and tolerance mechanisms of crop plants using proteomics-Current achievements and perspectives

(2013) Bronwyn J. Barkla et al.   PROTEOMICS

Betalain production is possible in anthocyanin-producing plant species given the presence of DOPA-dioxygenase and L-DOPA

(2012) Nilangani N Harris et al.   BMC PLANT BIOLOGY

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Ion Exchangers NHX1 and NHX2 Mediate Active Potassium Uptake into Vacuoles to Regulate Cell Turgor and Stomatal Function in Arabidopsis

(2012) V. Barragan et al.   PLANT CELL

Systematic Identification of Functional Plant Modules through the Integration of Complementary Data Sources

(2012) K. S. Heyndrickx et al.   PLANT PHYSIOLOGY

Protein profiling of epidermal bladder cells from the halophyteMesembryanthemum crystallinum

(2012) Bronwyn J. Barkla et al.   PROTEOMICS

Plant-Specific Cation/H+Exchanger 17 and Its Homologs Are Endomembrane K+Transporters with Roles in Protein Sorting

(2011) Salil Chanroj et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The aromatic/arginine selectivity filter of NIP aquaporins plays a critical role in substrate selectivity for silicon, boron, and arsenic

(2011) Namiki Mitani-Ueno et al.   JOURNAL OF EXPERIMENTAL BOTANY

TPC1 – SV Channels Gain Shape

(2011) Rainer Hedrich et al.   Molecular Plant

TheArabidopsisIntracellular Na+/H+Antiporters NHX5 and NHX6 Are Endosome Associated and Necessary for Plant Growth and Development

(2011) Elias Bassil et al.   PLANT CELL

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies

(2009) Yuling Jiao et al.   NATURE GENETICS

Quantitative Proteomics of the Tonoplast Reveals a Role for Glycolytic Enzymes in Salt Tolerance

(2009) B. J. Barkla et al.   PLANT CELL

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Crassulacean acid metabolism and fitness under water deficit stress: if not for carbon gain, what is facultative CAM good for?

(2008) Ana Herrera   ANNALS OF BOTANY

Large-scale mRNA expression profiling in the common ice plant, Mesembryanthemum crystallinum, performing C3 photosynthesis and Crassulacean acid metabolism (CAM)

(2008) John C. Cushman et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Salinity tolerance in halophytes*

(2008) Timothy J. Flowers et al.   NEW PHYTOLOGIST