Genome scans reveal candidate domestication and improvement genes in cultivated sunflower, as well as post-domestication introgression with wild relatives

Genomic analyses provide insights into the history of tomato breeding

(2014) Tao Lin et al.   NATURE GENETICS

Molecular Evolution of Candidate Genes for Crop-Related Traits in Sunflower (Helianthus annuus L.)

(2014) Jennifer R. Mandel et al.   PLoS One

Increasing homogeneity in global food supplies and the implications for food security

(2014) C. K. Khoury et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Bountiful Harvest: Genomic Insights into Crop Domestication Phenotypes

(2013) Kenneth M. Olsen et al.   Annual Review of Plant Biology

Genome-scale transcriptional analyses of first-generation interspecific sunflower hybrids reveals broad regulatory compatibility

(2013) Heather C Rowe et al.   BMC GENOMICS

Evolution of crop species: genetics of domestication and diversification

(2013) Rachel S. Meyer et al.   NATURE REVIEWS GENETICS

Genomic islands of divergence are not affected by geography of speciation in sunflowers

(2013) S. Renaut et al.   Nature Communications

Allele Identification for Transcriptome-Based Population Genomics in the Invasive Plant Centaurea solstitialis

(2013) Katrina M. Dlugosch et al.   G3-Genes Genomes Genetics

Association Mapping and the Genomic Consequences of Selection in Sunflower

(2013) Jennifer R. Mandel et al.   PLoS Genetics

The Genomic Signature of Crop-Wild Introgression in Maize

(2013) Matthew B. Hufford et al.   PLoS Genetics

A Critical Assessment of Storytelling: Gene Ontology Categories and the Importance of Validating Genomic Scans

(2012) Pavlos Pavlidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

Genetics and mapping of the R 11 gene conferring resistance to recently emerged rust races, tightly linked to male fertility restoration, in sunflower (Helianthus annuus L.)

(2012) L. L. Qi et al.   THEORETICAL AND APPLIED GENETICS

Evidence of selection on fatty acid biosynthetic genes during the evolution of cultivated sunflower

(2012) Mark A. Chapman et al.   THEORETICAL AND APPLIED GENETICS

Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression

(2011) Zhao Lai et al.   AMERICAN JOURNAL OF BOTANY

The role of transporters in supplying energy to plant plastids

(2011) U.-I. Flugge et al.   JOURNAL OF EXPERIMENTAL BOTANY

Sunflower domestication alleles support single domestication center in eastern North America

(2011) B. K. Blackman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic structure and domestication history of the grape

(2011) Sean Myles et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Contributions of Flowering Time Genes to Sunflower Domestication and Improvement

(2010) B. K. Blackman et al.   GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

(2010) Hon-Ming Lam et al.   NATURE GENETICS

Gene function analysis in complex data sets using ErmineJ

(2010) Jesse Gillis et al.   Nature Protocols

A role for LORELEI, a putative glycosylphosphatidylinositol-anchored protein, in Arabidopsis thaliana double fertilization and early seed development

(2010) Tatsuya Tsukamoto et al.   PLANT JOURNAL

MYB transcription factors in Arabidopsis

(2010) Christian Dubos et al.   TRENDS IN PLANT SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Detecting loci under selection in a hierarchically structured population

(2009) L Excoffier et al.   HEREDITY

Fitness effects and genetic architecture of plant-herbivore interactions in sunflower crop-wild hybrids

(2009) Jennifer M. Dechaine et al.   NEW PHYTOLOGIST

Genetic mapping for theRf1(fertility restoration) gene in sunflower (Helianthus annuusL.) by SSR and TRAP markers

(2009) B. Yue et al.   PLANT BREEDING

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Identifying Quantitative Trait Loci for Resistance to Sclerotinia Head Rot in Two USDA Sunflower Germplasms

(2008) B. Yue et al.   PHYTOPATHOLOGY

A Genomic Scan for Selection Reveals Candidates for Genes Involved in the Evolution of Cultivated Sunflower (Helianthus annuus)

(2008) M. A. Chapman et al.   PLANT CELL

Maternal Control of Male-Gamete Delivery in Arabidopsis Involves a Putative GPI-Anchored Protein Encoded by the LORELEI Gene

(2008) A. Capron et al.   PLANT CELL