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Title
Clinical Analysis and Interpretation of Cancer Genome Data
Authors
Keywords
-
Journal
JOURNAL OF CLINICAL ONCOLOGY
Volume 31, Issue 15, Pages 1825-1833
Publisher
American Society of Clinical Oncology (ASCO)
Online
2013-04-16
DOI
10.1200/jco.2013.48.7215
References
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- High-resolution mapping of copy-number alterations with massively parallel sequencing
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- Mutations and Treatment Outcome in Cytogenetically Normal Acute Myeloid Leukemia
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