The RUNX2 Cistrome in Osteoblasts

Oncogene-induced senescence: An essential role for Runx

(2014) Anne Terry et al.   CELL CYCLE

Genomic occupancy of Runx2 with global expression profiling identifies a novel dimension to control of osteoblastogenesis

(2014) Hai Wu et al.   GENOME BIOLOGY

Interactome Maps of Mouse Gene Regulatory Domains Reveal Basic Principles of Transcriptional Regulation

(2013) Kyong-Rim Kieffer-Kwon et al.   CELL

The Osteocyte: An Endocrine Cell … and More

(2013) Sarah L. Dallas et al.   ENDOCRINE REVIEWS

Histone Deacetylase Inhibition Promotes Osteoblast Maturation by Altering the Histone H4 Epigenome and Reduces Akt Phosphorylation

(2013) Amel Dudakovic et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Redefining the activity of a bone-specific transcription factor: Novel insights for understanding bone formation

(2013) Jane B Lian et al.   JOURNAL OF BONE AND MINERAL RESEARCH

An analysis of skeletal development in osteoblast-specific and chondrocyte-specific runt-related transcription factor-2 (Runx2) knockout mice

(2013) Takeshi Takarada et al.   JOURNAL OF BONE AND MINERAL RESEARCH

Chromatin connectivity maps reveal dynamic promoter–enhancer long-range associations

(2013) Yubo Zhang et al.   NATURE

The meaning, the sense and the significance: translating the science of mesenchymal stem cells into medicine

(2013) Paolo Bianco et al.   NATURE MEDICINE

Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH

(2013) Jeff Vierstra et al.   NATURE METHODS

Distal enhancers: new insights into heart development and disease

(2013) Joseph A. Wamstad et al.   TRENDS IN CELL BIOLOGY

Sequence signatures extracted from proximal promoters can be used to predict distal enhancers

(2013) Leila Taher et al.   GENOME BIOLOGY

Do Epigenetic Marks Govern Bone Mass and Homeostasis?

(2012) Jesus Delgado-Calle et al.   CURRENT GENOMICS

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

(2012) S. G. Landt et al.   GENOME RESEARCH

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Epigenetic Regulation of Early Osteogenesis and Mineralized Tissue Formation by a HOXA10-PBX1-Associated Complex

(2011) Jonathan A.R. Gordon et al.   CELLS TISSUES ORGANS

C/EBPβ and RUNX2 cooperate to degrade cartilage with MMP-13 as the target and HIF-2α as the inducer in chondrocytes

(2011) Makoto Hirata et al.   HUMAN MOLECULAR GENETICS

Genomic Promoter Occupancy of Runt-related Transcription Factor RUNX2 in Osteosarcoma Cells Identifies Genes Involved in Cell Adhesion and Motility

(2011) Margaretha van der Deen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The mouse RANKL gene locus is defined by a broad pattern of histone H4 acetylation and regulated through distinct distal enhancers

(2011) Melissa L. Martowicz et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

VDR/RXR and TCF4/β-Catenin Cistromes in Colonic Cells of Colorectal Tumor Origin: Impact onc-FOSandc-MYCGene Expression

(2011) Mark B. Meyer et al.   MOLECULAR ENDOCRINOLOGY

Mapping and analysis of chromatin state dynamics in nine human cell types

(2011) Jason Ernst et al.   NATURE

Building strong bones: molecular regulation of the osteoblast lineage

(2011) Fanxin Long   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Genome-wide Runx2 occupancy in prostate cancer cells suggests a role in regulating secretion

(2011) Gillian H. Little et al.   NUCLEIC ACIDS RESEARCH

Runx2 in normal tissues and cancer cells: A developing story

(2010) Karen Blyth et al.   BLOOD CELLS MOLECULES AND DISEASES

High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

(2010) A. P. Boyle et al.   GENOME RESEARCH

Signaling networks in RUNX2-dependent bone development

(2010) Toshihisa Komori   JOURNAL OF CELLULAR BIOCHEMISTRY

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

GREAT improves functional interpretation of cis-regulatory regions

(2010) Cory Y McLean et al.   NATURE BIOTECHNOLOGY

Mitotic bookmarking of genes: a novel dimension to epigenetic control

(2010) Sayyed K. Zaidi et al.   NATURE REVIEWS GENETICS

Perspectives onRUNXgenes: An update

(2009) M. Michael Cohen Jr.   AMERICAN JOURNAL OF MEDICAL GENETICS PART A

Genetic Control of Bone Formation

(2009) Gerard Karsenty et al.   Annual Review of Cell and Developmental Biology

Transcription-factor-mediated epigenetic control of cell fate and lineage commitmentThis paper is one of a selection of papers published in this Special Issue, entitled CSBMCB’s 51st Annual Meeting – Epigenetics and Chromatin Dynamics, and has undergone the Journal’s usual peer review process.

(2009) Gary S. Stein et al.   Biochemistry and Cell Biology

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Post-translational Regulation of Runx2 in Bone and Cartilage

(2009) J.H. Jonason et al.   JOURNAL OF DENTAL RESEARCH

Misexpression of CCAAT/enhancer binding protein beta causes osteopenia

(2009) Stefano Zanotti et al.   JOURNAL OF ENDOCRINOLOGY

Multifunctional Enhancers Regulate Mouse and Human Vitamin D Receptor Gene Transcription

(2009) Lee A. Zella et al.   MOLECULAR ENDOCRINOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Transcriptional Control of Skeletogenesis

(2008) Gerard Karsenty   Annual Review of Genomics and Human Genetics

Molecular Switches Involving Homeodomain Proteins, HOXA10 and RUNX2 Regulate Osteoblastogenesis

(2008) Mohammad Q. Hassan et al.   CELLS TISSUES ORGANS

CCAAT/Enhancer-binding Protein β Promotes Osteoblast Differentiation by Enhancing Runx2 Activity with ATF4

(2008) Hiroyuki Tominaga et al.   MOLECULAR BIOLOGY OF THE CELL

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

(2008) Anton Valouev et al.   NATURE METHODS

Phenotypic transcription factors epigenetically mediate cell growth control

(2008) S. A. Ali et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA