Active learning of neuron morphology for accurate automated tracing of neurites

APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree

(2013) Hang Xiao et al.   BIOINFORMATICS

Structural and molecular interrogation of intact biological systems

(2013) Kwanghun Chung et al.   NATURE

Neuronal Morphology Goes Digital: A Research Hub for Cellular and System Neuroscience

(2013) Ruchi Parekh et al.   NEURON

LIFE SCIENCE TECHNOLOGIES: This Is Your Brain: Mapping the Connectome

(2013) J. M. Perkel   SCIENCE

A hitchhiker's guide to diffusion tensor imaging

(2013) José M. Soares et al.   Frontiers in Neuroscience

Computational methods and challenges for large-scale circuit mapping

(2012) Moritz Helmstaedter et al.   CURRENT OPINION IN NEUROBIOLOGY

Local tracing of curvilinear structures in volumetric color images: Application to the Brainbow analysis

(2012) E. Bas et al.   JOURNAL OF VISUAL COMMUNICATION AND IMAGE REPRESENTATION

Serial two-photon tomography for automated ex vivo mouse brain imaging

(2012) Timothy Ragan et al.   NATURE METHODS

The future of the human connectome

(2012) D.C. Van Essen et al.   NEUROIMAGE

Efficient associative memory storage in cortical circuits of inhibitory and excitatory neurons

(2012) J. Chapeton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Automatic Reconstruction of Neural Morphologies with Multi-Scale Tracking

(2012) Anna Choromanska et al.   Frontiers in Neural Circuits

Automatic 3D neuron tracing using all-path pruning

(2011) H. Peng et al.   BIOINFORMATICS

Anisotropic path searching for automatic neuron reconstruction

(2011) Jun Xie et al.   MEDICAL IMAGE ANALYSIS

Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain

(2011) Hiroshi Hama et al.   NATURE NEUROSCIENCE

Principal Curves as Skeletons of Tubular Objects

(2011) Erhan Bas et al.   NEUROINFORMATICS

Automated Reconstruction of Neural Tissue and the Role of Large-Scale Simulation

(2011) James Kozloski   NEUROINFORMATICS

The DIADEM Data Sets: Representative Light Microscopy Images of Neuronal Morphology to Advance Automation of Digital Reconstructions

(2011) Kerry M. Brown et al.   NEUROINFORMATICS

A Broadly Applicable 3-D Neuron Tracing Method Based on Open-Curve Snake

(2011) Yu Wang et al.   NEUROINFORMATICS

The Past, Present, and Future of Single Neuron Reconstruction

(2011) Karel Svoboda   NEUROINFORMATICS

Automated Reconstruction of Dendritic and Axonal Trees by Global Optimization with Geometric Priors

(2011) Engin Türetken et al.   NEUROINFORMATICS

Automated Tracing of Neurites from Light Microscopy Stacks of Images

(2011) Paarth Chothani et al.   NEUROINFORMATICS

DIADEMchallenge.Org: A Compendium of Resources Fostering the Continuous Development of Automated Neuronal Reconstruction

(2011) Todd A. Gillette et al.   NEUROINFORMATICS

The DIADEM Metric: Comparing Multiple Reconstructions of the Same Neuron

(2011) Todd A. Gillette et al.   NEUROINFORMATICS

The DIADEM and Beyond

(2011) Yuan Liu   NEUROINFORMATICS

The Big and the Small: Challenges of Imaging the Brain's Circuits

(2011) J. W. Lichtman et al.   SCIENCE

Reconstruction of the neuromuscular junction connectome

(2010) R. Srinivasan et al.   BIOINFORMATICS

Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model

(2010) H. Peng et al.   BIOINFORMATICS

Automated reconstruction of neuronal morphology: An overview

(2010) Duncan E. Donohue et al.   BRAIN RESEARCH REVIEWS

A review of diffusion tensor magnetic resonance imaging computational methods and software tools

(2010) Khader M. Hasan et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Neuron tracing in perspective

(2010) Erik Meijering   CYTOMETRY PART A

Neuroscientists Grapple With Their Field's Big Questions

(2010) Greg Miller   SCIENCE

Advances in Light Microscopy for Neuroscience

(2009) Brian A. Wilt et al.   Annual Review of Neuroscience

Three-dimensional neuron tracing by voxel scooping

(2009) Alfredo Rodriguez et al.   JOURNAL OF NEUROSCIENCE METHODS

The Interscutularis Muscle Connectome

(2009) Ju Lu et al.   PLOS BIOLOGY

Live Neuron Morphology Automatically Reconstructed From Multiphoton and Confocal Imaging Data

(2008) Bradley E. Losavio et al.   JOURNAL OF NEUROPHYSIOLOGY

Detection of the optimal neuron traces in confocal microscopy images

(2008) Zlatko Vasilkoski et al.   JOURNAL OF NEUROSCIENCE METHODS

A technicolour approach to the connectome

(2008) Jeff W. Lichtman et al.   NATURE REVIEWS NEUROSCIENCE

Improved detection of branching points in algorithms for automated neuron tracing from 3D confocal images

(2007) Yousef Al-Kofahi et al.   CYTOMETRY PART A