BREEDING AND GENETICS SYMPOSIUM: Building single nucleotide polymorphism-derived gene regulatory networks: Towards functional genomewide association studies1,2

Beyond differential expression: the quest for causal mutations and effector molecules

(2012) Nicholas J Hudson et al.   BMC GENOMICS

Gene network analyses of first service conception in Brangus heifers: Use of genome and trait associations, hypothalamic-transcriptome information, and transcription factors1

(2012) M. R. S. Fortes et al.   JOURNAL OF ANIMAL SCIENCE

Leveraging models of cell regulation and GWAS data in integrative network-based association studies

(2012) Andrea Califano et al.   NATURE GENETICS

Gene regulatory network inference: evaluation and application to ovarian cancer allows the prioritization of drug targets

(2012) Piyush B Madhamshettiwar et al.   Genome Medicine

Guidelines for Genome-Wide Association Studies

(2012) Gregory S. Barsh et al.   PLoS Genetics

Six Degrees of Epistasis: Statistical Network Models for GWAS

(2012) B. A. McKinney et al.   Frontiers in Genetics

Statistical Inference and Reverse Engineering of Gene Regulatory Networks from Observational Expression Data

(2012) Frank Emmert-Streib et al.   Frontiers in Genetics

A single nucleotide polymorphism-derived regulatory gene network underlying puberty in 2 tropical breeds of beef cattle1

(2011) M. R. S. Fortes et al.   JOURNAL OF ANIMAL SCIENCE

PHYSIOLOGY AND ENDOCRINOLOGY SYMPOSIUM: How single nucleotide polymorphism chips will advance our knowledge of factors controlling puberty and aid in selecting replacement beef females1,2,3,4

(2011) W. M. Snelling et al.   JOURNAL OF ANIMAL SCIENCE

Genome-wide association studies of female reproduction in tropically adapted beef cattle1

(2011) R. J. Hawken et al.   JOURNAL OF ANIMAL SCIENCE

Using Regulatory and Epistatic Networks to Extend the Findings of a Genome Scan: Identifying the Gene Drivers of Pigmentation in Merino Sheep

(2011) Elsa García-Gámez et al.   PLoS One

Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data

(2010) Antonio Reverter et al.   BIOINFORMATICS

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

(2010) Timothy Ravasi et al.   CELL

Missing heritability and strategies for finding the underlying causes of complex disease

(2010) Evan E. Eichler et al.   NATURE REVIEWS GENETICS

Association weight matrix for the genetic dissection of puberty in beef cattle

(2010) M. R. S. Fortes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches

(2009) N. S. Watson-Haigh et al.   BIOINFORMATICS

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Intra- and inter-individual genetic differences in gene expression

(2009) Mark J. Cowley et al.   MAMMALIAN GENOME

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Network visualization and analysis of gene expression data using BioLayout Express3D

(2009) Athanasios Theocharidis et al.   Nature Protocols

A census of human transcription factors: function, expression and evolution

(2009) Juan M. Vaquerizas et al.   NATURE REVIEWS GENETICS

The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

(2009) et al.   SCIENCE

A Differential Wiring Analysis of Expression Data Correctly Identifies the Gene Containing the Causal Mutation

(2009) Nicholas J. Hudson et al.   PLoS Computational Biology

Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks

(2008) Antonio Reverter et al.   BIOINFORMATICS