Gene network analyses of first service conception in Brangus heifers: Use of genome and trait associations, hypothalamic-transcriptome information, and transcription factors1

An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation

(2012) Gregory P Harhay et al.   GENOME BIOLOGY

RNA Sequencing Reveals Novel Gene Clusters in Bovine Conceptuses Associated with Maternal Recognition of Pregnancy and Implantation1

(2011) Solomon Mamo et al.   BIOLOGY OF REPRODUCTION

Identification of a second gene associated with variation in vertebral number in domestic pigs

(2011) Satoshi Mikawa et al.   BMC GENETICS

The testosterone-dependent and independent transcriptional networks in the hypothalamus of Gpr54 and Kiss1 knockout male mice are not fully equivalent

(2011) Leah M Prentice et al.   BMC GENOMICS

Profiling for novel proteomics biomarkers in neurodevelopmental disorders

(2011) Ed Dudley et al.   Expert Review of Proteomics

Genetic analyses involving microsatellite ETH10 genotypes on bovine chromosome 5 and performance trait measures in Angus- and Brahman-influenced cattle1

(2011) K. L. DeAtley et al.   JOURNAL OF ANIMAL SCIENCE

The value of using DNA markers for beef bull selection in the seedstock sector1,2

(2011) A. L. Van Eenennaam et al.   JOURNAL OF ANIMAL SCIENCE

Detection of chromosome segments of zebu and taurine origin and their effect on beef production and growth1

(2011) S. Bolormaa et al.   JOURNAL OF ANIMAL SCIENCE

Genome-wide association studies for feedlot and growth traits in cattle1

(2011) S. Bolormaa et al.   JOURNAL OF ANIMAL SCIENCE

A genome-wide association study of meat and carcass traits in Australian cattle1

(2011) S. Bolormaa et al.   JOURNAL OF ANIMAL SCIENCE

A single nucleotide polymorphism-derived regulatory gene network underlying puberty in 2 tropical breeds of beef cattle1

(2011) M. R. S. Fortes et al.   JOURNAL OF ANIMAL SCIENCE

PHYSIOLOGY AND ENDOCRINOLOGY SYMPOSIUM: How single nucleotide polymorphism chips will advance our knowledge of factors controlling puberty and aid in selecting replacement beef females1,2,3,4

(2011) W. M. Snelling et al.   JOURNAL OF ANIMAL SCIENCE

Genome-wide association studies of female reproduction in tropically adapted beef cattle1

(2011) R. J. Hawken et al.   JOURNAL OF ANIMAL SCIENCE

Variants modulating the expression of a chromosome domain encompassing PLAG1 influence bovine stature

(2011) Latifa Karim et al.   NATURE GENETICS

Using Regulatory and Epistatic Networks to Extend the Findings of a Genome Scan: Identifying the Gene Drivers of Pigmentation in Merino Sheep

(2011) Elsa García-Gámez et al.   PLoS One

Neuropeptide profiling of the bovine hypothalamus: Thermal stabilization is an effective tool in inhibiting post-mortem degradation

(2011) Michelle L. Colgrave et al.   PROTEOMICS

Transcriptional regulation of the hypocretin/orexin gene by NR6A1

(2010) Susumu Tanaka et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

(2010) Timothy Ravasi et al.   CELL

GnRH signaling, the gonadotrope and endocrine control of fertility

(2010) Stuart P. Bliss et al.   FRONTIERS IN NEUROENDOCRINOLOGY

Genome-wide association and genomic selection in animal breedingThis article is one of a selection of papers from the conference “Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD crops for sustainable farming”.

(2010) Ben Hayes et al.   GENOME

Predicting genetic modifier loci using functional gene networks

(2010) I. Lee et al.   GENOME RESEARCH

Evaluation of tropically adapted straightbred and crossbred beef cattle: Heifer age and size at first conception and characteristics of their first calves12

(2010) D. G. Riley et al.   JOURNAL OF ANIMAL SCIENCE

Growth characteristics, reproductive performance, and evaluation of their associative relationships in Brangus cattle managed in a Chihuahuan Desert production system1

(2010) P. Luna-Nevarez et al.   JOURNAL OF ANIMAL SCIENCE

Calving day and age at first calving in Angus heifers1

(2010) J. Minick Bormann et al.   JOURNAL OF ANIMAL SCIENCE

Genome-wide mapping and identification of new quantitative trait loci affecting meat production, meat quality, and carcass traits within a Duroc purebred population1

(2010) Y. Soma et al.   JOURNAL OF ANIMAL SCIENCE

Single nucleotide polymorphisms in the growth hormone–insulin-like growth factor axis in straightbred and crossbred Angus, Brahman, and Romosinuano heifers: Population genetic analyses and association of genotypes with reproductive phenotypes1

(2010) P. Luna-Nevarez et al.   JOURNAL OF ANIMAL SCIENCE

The effect of GH and IGF1 on linear growth and skeletal development and their modulation by SOCS proteins

(2010) S F Ahmed et al.   JOURNAL OF ENDOCRINOLOGY

Regulation of tumor suppressor p53 at the RNA level

(2010) Anna Vilborg et al.   JOURNAL OF MOLECULAR MEDICINE-JMM

SNP discovery in the bovine milk transcriptome using RNA-Seq technology

(2010) Angela Cánovas et al.   MAMMALIAN GENOME

Targeting Intermediary Metabolism in the Hypothalamus as a Mechanism to Regulate Appetite

(2010) G. D. Lopaschuk et al.   PHARMACOLOGICAL REVIEWS

Association weight matrix for the genetic dissection of puberty in beef cattle

(2010) M. R. S. Fortes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IL-4/STAT6 immune axis regulates peripheral nutrient metabolism and insulin sensitivity

(2010) R. R. Ricardo-Gonzalez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Revealing strengths and weaknesses of methods for gene network inference

(2010) D. Marbach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Polymorphisms in theSTAT6gene and their association with carcass traits in feedlot cattle

(2009) G. Rincon et al.   ANIMAL GENETICS

Shadows of complexity: what biological networks reveal about epistasis and pleiotropy

(2009) Anna L. Tyler et al.   BIOESSAYS

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Bos taurus genome assembly

(2009) Yue Liu et al.   BMC GENOMICS

Dynamics of GHRH in third-ventricle cerebrospinal fluid of cattle: Relationship with serum concentrations of GH and responses to appetite-regulating peptides

(2009) M.G. Thomas et al.   DOMESTIC ANIMAL ENDOCRINOLOGY

Genome-wide association study of growth in crossbred beef cattle12

(2009) W. M. Snelling et al.   JOURNAL OF ANIMAL SCIENCE

Gene networks and the neuroendocrine regulation of puberty

(2009) Sergio R. Ojeda et al.   MOLECULAR AND CELLULAR ENDOCRINOLOGY

Molecular networks as sensors and drivers of common human diseases

(2009) Eric E. Schadt   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Mapping genes for complex traits in domestic animals and their use in breeding programmes

(2009) Michael E. Goddard et al.   NATURE REVIEWS GENETICS

A census of human transcription factors: function, expression and evolution

(2009) Juan M. Vaquerizas et al.   NATURE REVIEWS GENETICS

Expression of Genes for Appetite-Regulating Peptides in the Hypothalamus of Genetically Selected Lean and Fat Sheep

(2009) Chantacha Anukulkitch et al.   NEUROENDOCRINOLOGY

Current concepts in research related to oncogenes implicated in salivary gland tumourigenesis: a review of the literature

(2009) R Elledge   ORAL DISEASES

Development and Characterization of a High Density SNP Genotyping Assay for Cattle

(2009) Lakshmi K. Matukumalli et al.   PLoS One

Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds

(2009) et al.   SCIENCE

Genetics of heifer puberty in two tropical beef genotypes in northern Australia and associations with heifer- and steer-production traits

(2009) D. J. Johnston et al.   Animal Production Science

Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks

(2008) Antonio Reverter et al.   BIOINFORMATICS

Prepubertal physical activity up-regulates estrogen receptor β, BRCA1 and p53 mRNA expression in the rat mammary gland

(2008) M. Wang et al.   BREAST CANCER RESEARCH AND TREATMENT

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

(2008) Curtis P Van Tassell et al.   NATURE METHODS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Genomic Convergence Analysis of Schizophrenia: mRNA Sequencing Reveals Altered Synaptic Vesicular Transport in Post-Mortem Cerebellum

(2008) Joann Mudge et al.   PLoS One

Inteferons pen the JAK–STAT pathway

(2008) Christian Schindler et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

The impact of next-generation sequencing technology on genetics

(2008) Elaine R. Mardis   TRENDS IN GENETICS