Periodic and coordinated gene expression between a diazotroph and its diatom host

Seasonal resource conditions favor a summertime increase in North Pacific diatom–diazotroph associations

(2018) Christopher L. Follett et al.   ISME Journal

Nitrogen fixation rates diagnosed from diurnal changes in elemental stoichiometry

(2018) Christopher L. Follett et al.   LIMNOLOGY AND OCEANOGRAPHY

Iron and vitamin interactions in marine diatom isolates and natural assemblages of the Northeast Pacific Ocean

(2017) Natalie R. Cohen et al.   LIMNOLOGY AND OCEANOGRAPHY

Sequential induction of Fur-regulated genes in response to iron limitation inBacillus subtilis

(2017) Hualiang Pi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Defining Brugia malayi and Wolbachia symbiosis by stage-specific dual RNA-seq

(2017) Alexandra Grote et al.   PLoS Neglected Tropical Diseases

Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera

(2017) Samuel T. Wilson et al.   Nature Microbiology

Symbiotic Nitrogen Fixation and the Challenges to Its Extension to Nonlegumes

(2016) Florence Mus et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cyanobacteria and Eukaryotic Algae Use Different Chemical Variants of Vitamin B12

(2016) Katherine Emma Helliwell et al.   CURRENT BIOLOGY

Molecular markers define progressing stages of phosphorus limitation in the nitrogen-fixing cyanobacterium,Crocosphaera

(2016) Nicole Pereira et al.   JOURNAL OF PHYCOLOGY

Temporal variability of nitrogen fixation and particulate nitrogen export at Station ALOHA

(2016) Daniela Böttjer et al.   LIMNOLOGY AND OCEANOGRAPHY

Direct evidence of the molecular basis for biological silicon transport

(2016) Michael J. Knight et al.   Nature Communications

Gene expression plasticity as a mechanism of coral adaptation to a variable environment

(2016) Carly D. Kenkel et al.   Nature Ecology & Evolution

Localization and Evolution of Putative Triose Phosphate Translocators in the DiatomPhaeodactylum tricornutum

(2015) Daniel Moog et al.   Genome Biology and Evolution

Gene Networks in the Wild: Identifying Transcriptional Modules that Mediate Coral Resistance to Experimental Heat Stress

(2015) Noah H. Rose et al.   Genome Biology and Evolution

Metatranscriptome analyses indicate resource partitioning between diatoms in the field

(2015) Harriet Alexander et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial community transcriptional networks are conserved in three domains at ocean basin scales

(2015) Frank O. Aylward et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional group-specific traits drive phytoplankton dynamics in the oligotrophic ocean

(2015) Harriet Alexander et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Detecting Rhythms in Time Series with RAIN

(2014) Paul F. Thaben et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Circadian clocks in symbiotic corals: The duet between Symbiodinium algae and their coral host

(2014) Michal Sorek et al.   Marine Genomics

Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages

(2014) E. A. Ottesen et al.   SCIENCE

Upward nitrate transport by phytoplankton in oceanic waters: balancing nutrient budgets in oligotrophic seas

(2014) Tracy A. Villareal et al.   PeerJ

RNA polymerase and the ribosome: the close relationship

(2013) Katelyn McGary et al.   CURRENT OPINION IN MICROBIOLOGY

Genome-Wide and Heterocyst-Specific Circadian Gene Expression in the Filamentous Cyanobacterium Anabaena sp. Strain PCC 7120

(2013) H. Kushige et al.   JOURNAL OF BACTERIOLOGY

The Uptake Hydrogenase in the Unicellular Diazotrophic Cyanobacterium Cyanothece sp. Strain PCC 7822 Protects Nitrogenase from Oxygen Toxicity

(2013) X. Zhang et al.   JOURNAL OF BACTERIOLOGY

Genome-wide diel growth state transitions in the diatom Thalassiosira pseudonana

(2013) J. Ashworth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Trace Metal Composition of Marine Phytoplankton

(2012) Benjamin S. Twining et al.   Annual Review of Marine Science

Silencing of the Violaxanthin De-Epoxidase Gene in the Diatom Phaeodactylum tricornutum Reduces Diatoxanthin Synthesis and Non-Photochemical Quenching

(2012) Johann Lavaud et al.   PLoS One

Transcriptome and Proteome Dynamics of a Light-Dark Synchronized Bacterial Cell Cycle

(2012) Jacob R. Waldbauer et al.   PLoS One

Predictable and efficient carbon sequestration in the North Pacific Ocean supported by symbiotic nitrogen fixation

(2012) D. M. Karl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Directional RNA deep sequencing sheds new light on the transcriptional response of Anabaena sp. strain PCC 7120 to combined-nitrogen deprivation

(2011) Britt L Flaherty et al.   BMC GENOMICS

Nitrogen fixation and transfer in open ocean diatom–cyanobacterial symbioses

(2011) Rachel A Foster et al.   ISME Journal

Summer blooms of diatom-diazotroph assemblages and surface chlorophyll in the North Pacific gyre: A disconnect

(2011) Tracy A. Villareal et al.   JOURNAL OF GEOPHYSICAL RESEARCH

Latitudinal distribution of diazotrophs and their nitrogen fixation in the tropical and subtropical western North Pacific

(2011) Satoshi Kitajima et al.   LIMNOLOGY AND OCEANOGRAPHY

Molecular Response of the Bloom-Forming Cyanobacterium, Microcystis aeruginosa, to Phosphorus Limitation

(2011) Matthew J. Harke et al.   MICROBIAL ECOLOGY

Iron conservation by reduction of metalloenzyme inventories in the marine diazotroph Crocosphaera watsonii

(2011) M. A. Saito et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hydrogen Cycling by the Unicellular Marine Diazotroph Crocosphaera watsonii Strain WH8501

(2010) S. T. Wilson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Genome-wide analysis of diel gene expression in the unicellular N2-fixing cyanobacterium Crocosphaera watsonii WH 8501

(2010) Tuo Shi et al.   ISME Journal

ISOLATION OF CALOTHRIX RHIZOSOLENIAE (CYANOBACTERIA) STRAIN SC01 FROM CHAETOCEROS (BACILLARIOPHYTA) SPP. DIATOMS OF THE SUBTROPICAL NORTH PACIFIC OCEAN1

(2010) Rachel A. Foster et al.   JOURNAL OF PHYCOLOGY

Nitrogen Fixation and Hydrogen Metabolism in Cyanobacteria

(2010) H. Bothe et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Transcriptional patterns in both host and bacterium underlie a daily rhythm of anatomical and metabolic change in a beneficial symbiosis

(2010) A. M. Wier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Ocean's least productive waters are expanding

(2008) Jeffrey J. Polovina et al.   GEOPHYSICAL RESEARCH LETTERS

Expanding the Substrate Tolerance of Biotin Ligase through Exploration of Enzymes from Diverse Species

(2008) Sarah A. Slavoff et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Global transcriptomic analysis of Cyanothece 51142 reveals robust diurnal oscillation of central metabolic processes

(2008) J. Stockel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Summer phytoplankton blooms in the oligotrophic North Pacific Subtropical Gyre: Historical perspective and recent observations

(2007) John E. Dore et al.   PROGRESS IN OCEANOGRAPHY