Nonoptimal codon usage influences protein structure in intrinsically disordered regions

Codon Usage Influences the Local Rate of Translation Elongation to Regulate Co-translational Protein Folding

(2015) Chien-Hung Yu et al.   MOLECULAR CELL

Conserved RNA Helicase FRH Acts Nonenzymatically to Support the Intrinsically Disordered Neurospora Clock Protein FRQ

(2013) Jennifer M. Hurley et al.   MOLECULAR CELL

Non-optimal codon usage affects expression, structure and function of clock protein FRQ

(2013) Mian Zhou et al.   NATURE

Non-optimal codon usage is a mechanism to achieve circadian clock conditionality

(2013) Yao Xu et al.   NATURE

Silent Substitutions Predictably Alter Translation Elongation Rates and Protein Folding Efficiencies

(2012) Paige S. Spencer et al.   JOURNAL OF MOLECULAR BIOLOGY

Genome-Wide Selection on Codon Usage at the Population Level in the Fungal Model Organism Neurospora crassa

(2012) C. A. Whittle et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding

(2012) Sebastian Pechmann et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The Cyanobacterial Circadian System: From Biophysics to Bioevolution

(2011) Carl Hirschie Johnson et al.   Annual Review of Biophysics

The ribosomal tunnel as a functional environment for nascent polypeptide folding and translational stalling

(2011) Daniel N Wilson et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Unstructural biology coming of age

(2011) Peter Tompa   CURRENT OPINION IN STRUCTURAL BIOLOGY

Evolution of Synonymous Codon Usage in Neurospora tetrasperma and Neurospora discreta

(2011) C. A. Whittle et al.   Genome Biology and Evolution

Regulation of the Activity and Cellular Localization of the Circadian Clock Protein FRQ

(2011) Joonseok Cha et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Circadian Conformational Change of the Neurospora Clock Protein FREQUENCY Triggered by Clustered Hyperphosphorylation of a Basic Domain

(2011) Christina Querfurth et al.   MOLECULAR CELL

Determinants of translation efficiency and accuracy

(2011) H. Gingold et al.   Molecular Systems Biology

An Evolutionarily Conserved Mechanism for Controlling the Efficiency of Protein Translation

(2010) Tamir Tuller et al.   CELL

A Role for Codon Order in Translation Dynamics

(2010) Gina Cannarozzi et al.   CELL

Functional Significance of FRH in Regulating the Phosphorylation and Stability ofNeurosporaCircadian Clock Protein FRQ

(2010) Jinhu Guo et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Slowing Bacterial Translation Speed Enhances Eukaryotic Protein Folding Efficiency

(2010) Efraín Siller et al.   JOURNAL OF MOLECULAR BIOLOGY

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

Synonymous codon usage influences the local protein structure observed

(2010) Rhodri Saunders et al.   NUCLEIC ACIDS RESEARCH

Translationally optimal codons associate with aggregation-prone sites in proteins

(2010) Yaelim Lee et al.   PROTEOMICS

The Exosome Regulates Circadian Gene Expression in a Posttranscriptional Negative Feedback Loop

(2009) Jinhu Guo et al.   CELL

Translationally Optimal Codons Associate with Structurally Sensitive Sites in Proteins

(2009) T. Zhou et al.   MOLECULAR BIOLOGY AND EVOLUTION

Quantitative Proteomics Reveals a Dynamic Interactome and Phase-Specific Phosphorylation in the Neurospora Circadian Clock

(2009) Christopher L. Baker et al.   MOLECULAR CELL

The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins

(2009) Günter Kramer et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Transient ribosomal attenuation coordinates protein synthesis and co-translational folding

(2009) Gong Zhang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Relationship between Phylogenetic Distribution and Genomic Features in Neurospora crassa

(2009) Takao Kasuga et al.   PLoS One

Setting the pace of the Neurospora circadian clock by multiple independent FRQ phosphorylation events

(2009) C.-T. Tang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution

(2008) D. Allan Drummond et al.   CELL

Function and structure of inherently disordered proteins

(2008) A Keith Dunker et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY