Non-optimal codon usage is a mechanism to achieve circadian clock conditionality

Explaining complex codon usage patterns with selection for translational efficiency, mutation bias, and genetic drift

(2011) P. Shah et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A high resolution map of a cyanobacterial transcriptome

(2011) Vikram Vijayan et al.   GENOME BIOLOGY

In vitroregulation of circadian phosphorylation rhythm of cyanobacterial clock protein KaiC by KaiA and KaiB

(2010) Masato Nakajima et al.   FEBS LETTERS

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

Translation efficiency is determined by both codon bias and folding energy

(2010) Tamir Tuller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Universal Trend of Reduced mRNA Stability near the Translation-Initiation Site in Prokaryotes and Eukaryotes

(2010) Wanjun Gu et al.   PLoS Computational Biology

Effect of Correlated tRNA Abundances on Translation Errors and Evolution of Codon Usage Bias

(2010) Premal Shah et al.   PLoS Genetics

Translationally Optimal Codons Associate with Structurally Sensitive Sites in Proteins

(2009) T. Zhou et al.   MOLECULAR BIOLOGY AND EVOLUTION

Intramolecular Regulation of Phosphorylation Status of the Circadian Clock Protein KaiC

(2009) Yao Xu et al.   PLoS One

Cyanobacterial daily life with Kai-based circadian and diurnal genome-wide transcriptional control in Synechococcus elongatus

(2009) H. Ito et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Oscillations in supercoiling drive circadian gene expression in cyanobacteria

(2009) Vikram Vijayan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coding-Sequence Determinants of Gene Expression in Escherichia coli

(2009) G. Kudla et al.   SCIENCE

Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution

(2008) D. Allan Drummond et al.   CELL

Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes

(2008) Sandip Paul et al.   GENOME BIOLOGY