Determinants of translation efficiency and accuracy

The role of codon selection in regulation of translation efficiency deduced from synthetic libraries

(2011) Sivan Navon et al.   GENOME BIOLOGY

The mRNA landscape at yeast translation initiation sites

(2010) A. Robbins-Pianka et al.   BIOINFORMATICS

An Evolutionarily Conserved Mechanism for Controlling the Efficiency of Protein Translation

(2010) Tamir Tuller et al.   CELL

A Role for Codon Order in Translation Dynamics

(2010) Gina Cannarozzi et al.   CELL

Structural and mechanistic insights into translation termination

(2010) Portia Gloria Loh et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

The Influence of Anticodon-Codon Interactions and Modified Bases on Codon Usage Bias in Bacteria

(2010) W. Ran et al.   MOLECULAR BIOLOGY AND EVOLUTION

Translational Regulation of Gene Expression during Conditions of Cell Stress

(2010) Keith A. Spriggs et al.   MOLECULAR CELL

GroEL dependency affects codon usage—support for a critical role of misfolding in gene evolution

(2010) Tobias Warnecke et al.   Molecular Systems Biology

Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line

(2010) Christine Vogel et al.   Molecular Systems Biology

The mechanism of eukaryotic translation initiation and principles of its regulation

(2010) Richard J. Jackson et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Translation efficiency is determined by both codon bias and folding energy

(2010) Tamir Tuller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Visualizing high error levels during gene expression in living bacterial cells

(2010) M. Meyerovich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein abundances are more conserved than mRNA abundances across diverse taxa

(2010) Jon M. Laurent et al.   PROTEOMICS

Differential Arginylation of Actin Isoforms Is Regulated by Coding Sequence-Dependent Degradation

(2010) F. Zhang et al.   SCIENCE

A Universal Trend of Reduced mRNA Stability near the Translation-Initiation Site in Prokaryotes and Eukaryotes

(2010) Wanjun Gu et al.   PLoS Computational Biology

Why there is more to protein evolution than protein function: splicing, nucleosomes and dual-coding sequence

(2009) Tobias Warnecke et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Measuring and Detecting Molecular Adaptation in Codon Usage Against Nonsense Errors During Protein Translation

(2009) Michael A. Gilchrist et al.   GENETICS

Experimentally Increased Codon Bias in the Drosophila Adh Gene Leads to an Increase in Larval, But Not Adult, Alcohol Dehydrogenase Activity

(2009) W. Hense et al.   GENETICS

Genome-wide Analysis of tRNA Charging and Activation of the eIF2 Kinase Gcn2p

(2009) John M. Zaborske et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Dynamic Organization of Aminoacyl-tRNA Synthetase Complexes in the Cytoplasm of Human Cells

(2009) Monika Kaminska et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Translationally Optimal Codons Associate with Structurally Sensitive Sites in Proteins

(2009) T. Zhou et al.   MOLECULAR BIOLOGY AND EVOLUTION

Viral adaptation to host: a proteome-based analysis of codon usage and amino acid preferences

(2009) Iris Bahir et al.   Molecular Systems Biology

Innate immune and chemically triggered oxidative stress modifies translational fidelity

(2009) Nir Netzer et al.   NATURE

Transient ribosomal attenuation coordinates protein synthesis and co-translational folding

(2009) Gong Zhang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Selection for minimization of translational frameshifting errors as a factor in the evolution of codon usage

(2009) Yang Huang et al.   NUCLEIC ACIDS RESEARCH

Design Parameters to Control Synthetic Gene Expression in Escherichia coli

(2009) Mark Welch et al.   PLoS One

Coding-Sequence Determinants of Gene Expression in Escherichia coli

(2009) G. Kudla et al.   SCIENCE

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

(2009) N. T. Ingolia et al.   SCIENCE

Comparative Functional Analysis of the Caenorhabditis elegans and Drosophila melanogaster Proteomes

(2009) Sabine P Schrimpf et al.   PLOS BIOLOGY

Concordant Regulation of Translation and mRNA Abundance for Hundreds of Targets of a Human microRNA

(2009) David G. Hendrickson et al.   PLOS BIOLOGY

Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution

(2008) D. Allan Drummond et al.   CELL

Integrative Analyses of Posttranscriptional Regulation in the Yeast Saccharomyces cerevisiae Using Transcriptomic and Proteomic Data

(2008) Gang Wu et al.   CURRENT MICROBIOLOGY

The Cost of Expression of Escherichia coli lac Operon Proteins Is in the Process, Not in the Products

(2008) D. M. Stoebel et al.   GENETICS

Relaxation of yeast mitochondrial functions after whole-genome duplication

(2008) H. Jiang et al.   GENOME RESEARCH

Synonymous Mutations and Ribosome Stalling Can Lead to Altered Folding Pathways and Distinct Minima

(2008) Chung-Jung Tsai et al.   JOURNAL OF MOLECULAR BIOLOGY

Codon Bias is a Major Factor Explaining Phage Evolution in Translationally Biased Hosts

(2008) Alessandra Carbone   JOURNAL OF MOLECULAR EVOLUTION

Estimating Translational Selection in Eukaryotic Genomes

(2008) M. dos Reis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Following translation by single ribosomes one codon at a time

(2008) Jin-Der Wen et al.   NATURE

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE

Tight Regulation of Unstructured Proteins: From Transcript Synthesis to Protein Degradation

(2008) J. Gsponer et al.   SCIENCE

Genome Landscapes and Bacteriophage Codon Usage

(2008) Julius B. Lucks et al.   PLoS Computational Biology