Rapid diversification associated with ecological specialization in NeotropicalAdelphabutterflies

Sexual Selection and Diversification: Reexamining the Correlation between Dichromatism and Speciation Rate in Birds

(2014) Huateng Huang et al.   AMERICAN NATURALIST

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

(2014) Deren A. R. Eaton   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Empirical Assessment of RAD Sequencing for Interspecific Phylogeny

(2014) Astrid Cruaud et al.   MOLECULAR BIOLOGY AND EVOLUTION

Application of RAD-based phylogenetics to complex relationships among variously related taxa in a species flock

(2014) Tetsumi Takahashi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

(2014) Daniel L. Rabosky   PLoS One

A Framework Phylogeny of the American Oak Clade Based on Sequenced RAD Data

(2014) Andrew L. Hipp et al.   PLoS One

Amplification Biases and Consistent Recovery of Loci in a Double-Digest RAD-seq Protocol

(2014) Jeffrey M. DaCosta et al.   PLoS One

Defense mutualisms enhance plant diversification

(2014) Marjorie G. Weber et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis and Visualization of Complex Macroevolutionary Dynamics: An Example from Australian Scincid Lizards

(2014) Daniel L. Rabosky et al.   SYSTEMATIC BIOLOGY

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Do Heliconius butterfly species exchange mimicry alleles?

(2013) J. Smith et al.   Biology Letters

A New Method for Genome-wide Marker Development and Genotyping Holds Great Promise for Molecular Primatology

(2013) Christina M. Bergey et al.   INTERNATIONAL JOURNAL OF PRIMATOLOGY

The evolutionary history ofXiphophorusfish and their sexually selected sword: a genome-wide approach using restriction site-associated DNA sequencing

(2013) Julia C. Jones et al.   MOLECULAR ECOLOGY

RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

(2013) B. Arnold et al.   MOLECULAR ECOLOGY

STRAW: Species TRee Analysis Web server

(2013) Timothy I. Shaw et al.   NUCLEIC ACIDS RESEARCH

Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)

(2013) Deren A. R. Eaton et al.   SYSTEMATIC BIOLOGY

Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization

(2013) Marie Cariou et al.   Ecology and Evolution

Genome-wide patterns of divergence and gene flow across a butterfly radiation

(2012) Nicola J. Nadeau et al.   MOLECULAR ECOLOGY

The effect of RAD allele dropout on the estimation of genetic variation within and between populations

(2012) Mathieu Gautier et al.   MOLECULAR ECOLOGY

Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

(2012) Catherine E. Wagner et al.   MOLECULAR ECOLOGY

Inferring Phylogenies from RAD Sequence Data

(2012) Benjamin E. R. Rubin et al.   PLoS One

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

A Bayesian framework to estimate diversification rates and their variation through time and space

(2011) Daniele Silvestro et al.   BMC EVOLUTIONARY BIOLOGY

Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes

(2011) P. A. Hohenlohe et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Estimating Species Trees from Unrooted Gene Trees

(2011) Liang Liu et al.   SYSTEMATIC BIOLOGY

Adaptive Radiation, Ecological Opportunity, and Evolutionary Determinism

(2010) Jonathan B. Losos   AMERICAN NATURALIST

Phylogenetic Insights on Adaptive Radiation

(2010) Richard E. Glor   Annual Review of Ecology Evolution and Systematics

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Host shifts and evolutionary radiations of butterflies

(2010) J. A. Fordyce   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Rapid diversification and not clade age explains high diversity in neotropical Adelpha butterflies

(2010) S. P. Mullen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Impact of duplicate gene copies on phylogenetic analysis and divergence time estimates in butterflies

(2009) Nélida Pohl et al.   BMC EVOLUTIONARY BIOLOGY

Nymphalid butterflies diversify following near demise at the Cretaceous/Tertiary boundary

(2009) N. Wahlberg et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Adaptive Radiation: Contrasting Theory with Data

(2009) S. Gavrilets et al.   SCIENCE

Phylogenetic Inference Using Whole Genomes

(2008) Bruce Rannala et al.   Annual Review of Genomics and Human Genetics

Ecological Speciation in Mimetic Butterflies

(2008) Chris D. Jiggins   BIOSCIENCE

Commentary on Losos (2008): niche conservatism déjà vu

(2008) John J. Wiens   ECOLOGY LETTERS

HYBRID ZONE ORIGINS, SPECIES BOUNDARIES, AND THE EVOLUTION OF WING-PATTERN DIVERSITY IN A POLYTYPIC SPECIES COMPLEX OF NORTH AMERICAN ADMIRAL BUTTERFLIES (NYMPHALIDAE: LIMENITIS)

(2008) Sean P. Mullen et al.   EVOLUTION

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY