Model misspecification confounds the estimation of rates and exaggerates their time dependency

The Performance of the Date-Randomization Test in Phylogenetic Analyses of Time-Structured Virus Data

(2015) Sebastián Duchêne et al.   MOLECULAR BIOLOGY AND EVOLUTION

Lack of support for the time-dependent molecular evolution hypothesis

(2015) Brent C. Emerson et al.   MOLECULAR ECOLOGY

Time-dependent estimates of molecular evolutionary rates: evidence and causes

(2015) Simon Y. W. Ho et al.   MOLECULAR ECOLOGY

Estimation of the Spontaneous Mutation Rate in Heliconius melpomene

(2014) Peter D. Keightley et al.   MOLECULAR BIOLOGY AND EVOLUTION

Estimation of the Spontaneous Mutation Rate per Nucleotide Site in a Drosophila melanogaster Full-Sib Family

(2013) Peter D. Keightley et al.   GENETICS

The Human Mutation Rate Is Increasing, Even As It Slows

(2013) Gregg W.C. Thomas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Revising the human mutation rate: implications for understanding human evolution

(2012) Aylwyn Scally et al.   NATURE REVIEWS GENETICS

Bayesian Estimation of Substitution Rates from Ancient DNA Sequences with Low Information Content

(2011) Simon Y. W. Ho et al.   SYSTEMATIC BIOLOGY

Do complex population histories drive higher estimates of substitution rate in phylogenetic reconstructions?

(2009) UMA RAMAKRISHNAN et al.   MOLECULAR ECOLOGY

Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods

(2009) MIGUEL NAVASCUÉS et al.   MOLECULAR ECOLOGY

Time Dependency of Molecular Rates in Ancient DNA Data Sets, A Sampling Artifact?

(2009) Regis Debruyne et al.   SYSTEMATIC BIOLOGY

Hantavirus Evolution in Relation to Its Rodent and Insectivore Hosts: No Evidence for Codivergence

(2008) C. Ramsden et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mutation and Evolutionary Rates in Adélie Penguins from the Antarctic

(2008) Craig D. Millar et al.   PLoS Genetics