A Comprehensive Transcriptomic and Proteomic Analysis of Hydra Head Regeneration

Nucleolin: Dual roles in rDNA chromatin transcription

(2015) Nathalie Durut et al.   GENE

A multivariate approach to the integration of multi-omics datasets

(2014) Chen Meng et al.   BMC BIOINFORMATICS

Initiating a regenerative response; cellular and molecular features of wound healing in the cnidarian Nematostella vectensis

(2014) Timothy Q DuBuc et al.   BMC BIOLOGY

Protein kinase CK2 is required for Wntless internalization and Wnt secretion

(2014) Reinoud E.A. de Groot et al.   CELLULAR SIGNALLING

Casein kinase 1 and Wnt/β-catenin signaling

(2014) Cristina-Maria Cruciat   CURRENT OPINION IN CELL BIOLOGY

Inducible intestine-specific deletion of Krüppel-like factor 5 is characterized by a regenerative response in adult mouse colon

(2014) Mandayam O. Nandan et al.   DEVELOPMENTAL BIOLOGY

Rif1 controls DNA replication by directing Protein Phosphatase 1 to reverse Cdc7-mediated phosphorylation of the MCM complex

(2014) S.-i. Hiraga et al.   GENES & DEVELOPMENT

New Gene Evolution in the Bonus-TIF1-γ/TRIM33 Family Impacted the Architecture of the Vertebrate Dorsal–Ventral Patterning Network

(2014) Robert G. Wisotzkey et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mitotic Wnt Signaling Promotes Protein Stabilization and Regulates Cell Size

(2014) Sergio P. Acebron et al.   MOLECULAR CELL

New insights into ubiquitin E3 ligase mechanism

(2014) Christopher E Berndsen et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

TBC1D24 regulates neuronal migration and maturation through modulation of the ARF6-dependent pathway

(2014) Antonio Falace et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Injury-induced immune responses in Hydra

(2014) Yvan Wenger et al.   SEMINARS IN IMMUNOLOGY

Rif1 Controls DNA Replication Timing in Yeast through the PP1 Phosphatase Glc7

(2014) Stefano Mattarocci et al.   Cell Reports

Maintaining neural stem cell identity in the brain

(2014) Yanrui Jiang et al.   eLife

RNAseq versus genome-predicted transcriptomes: a large population of novel transcripts identified in an Illumina-454 Hydra transcriptome

(2013) Yvan Wenger et al.   BMC GENOMICS

The role of periostin in tissue remodeling across health and disease

(2013) Simon J. Conway et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Fra, Fra Away: The complex role of activator protein 1 in liver injury

(2013) David A. Brenner   HEPATOLOGY

Phosphorylation Regulatesmyo-Inositol-3-phosphate Synthase

(2013) Rania M. Deranieh et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Axon–soma communication in neuronal injury

(2013) Ida Rishal et al.   NATURE REVIEWS NEUROSCIENCE

The RNA-binding protein repertoire of embryonic stem cells

(2013) S Chul Kwon et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

PIWI proteins and PIWI-interacting RNAs function in Hydra somatic stem cells

(2013) C. E. Juliano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tudor: a versatile family of histone methylation ‘readers’

(2013) Rui Lu et al.   TRENDS IN BIOCHEMICAL SCIENCES

SILAC Proteomics of Planarians Identifies Ncoa5 as a Conserved Component of Pluripotent Stem Cells

(2013) Alexander Böser et al.   Cell Reports

A de novo assembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regeneration

(2013) Mario Looso et al.   GENOME BIOLOGY

GTPase Networks in Membrane Traffic

(2012) Emi Mizuno-Yamasaki et al.   Annual Review of Biochemistry

Endocytosis and autophagy: Shared machinery for degradation

(2012) Christopher A. Lamb et al.   BIOESSAYS

Wnt Signaling through Inhibition of β-Catenin Degradation in an Intact Axin1 Complex

(2012) Vivian S.W. Li et al.   CELL

MicroRNA/mRNA regulatory networks in the control of skin development and regeneration

(2012) Natalia Botchkareva   CELL CYCLE

Condensin, Chromatin Crossbarring and Chromosome Condensation

(2012) Rahul Thadani et al.   CURRENT BIOLOGY

Injury-induced asymmetric cell death as a driving force for head regeneration in Hydra

(2012) Brigitte Galliot   DEVELOPMENT GENES AND EVOLUTION

Retrotransposon long interspersed nucleotide element-1 (LINE-1) is activated during salamander limb regeneration

(2012) Wei Zhu et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Posttraumatic regeneration involves differential expression of long terminal repeat (LTR) retrotransposons

(2012) Vladimir S. Mashanov et al.   DEVELOPMENTAL DYNAMICS

HDAC5 is a novel injury-regulated tubulin deacetylase controlling axon regeneration

(2012) Yongcheol Cho et al.   EMBO JOURNAL

Spiked-in Pulsed in Vivo Labeling Identifies a New Member of the CCN Family in Regenerating Newt Hearts

(2012) Mario Looso et al.   JOURNAL OF PROTEOME RESEARCH

Molecular Signatures of the Three Stem Cell Lineages in Hydra and the Emergence of Stem Cell Function at the Base of Multicellularity

(2012) Georg Hemmrich et al.   MOLECULAR BIOLOGY AND EVOLUTION

Deep sequencing reveals unique small RNA repertoire that is regulated during head regeneration in Hydra magnipapillata

(2012) Srikar Krishna et al.   NUCLEIC ACIDS RESEARCH

FoxO is a critical regulator of stem cell maintenance in immortal Hydra

(2012) A.-M. Boehm et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcription factors ETS2 and MESP1 transdifferentiate human dermal fibroblasts into cardiac progenitors

(2012) J. F. Islas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epithelial-Mesenchymal Transition: General Principles and Pathological Relevance with Special Emphasis on the Role of Matrix Metalloproteinases

(2012) P. Nistico et al.   Cold Spring Harbor Perspectives in Biology

TCF/LEFs and Wnt Signaling in the Nucleus

(2012) K. M. Cadigan et al.   Cold Spring Harbor Perspectives in Biology

Fez function is required to maintain the size of the animal plate in the sea urchin embryo

(2011) S. Yaguchi et al.   DEVELOPMENT

Multiple Factors Confer Specific Cdc42 and Rac Protein Activation by Dedicator of Cytokinesis (DOCK) Nucleotide Exchange Factors

(2011) Kiran Kulkarni et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Sequential Activation and Inactivation of Dishevelled in the Wnt/β-Catenin Pathway by Casein Kinases

(2011) Ondrej Bernatik et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Fas-associated factor 1 antagonizes Wnt signaling by promoting β-catenin degradation

(2011) Long Zhang et al.   MOLECULAR BIOLOGY OF THE CELL

Regulatory evolution through divergence of a phosphoswitch in the transcription factor CEBPB

(2011) Vincent J. Lynch et al.   NATURE

Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics

(2011) Tamar Geiger et al.   Nature Protocols

ARF family G proteins and their regulators: roles in membrane transport, development and disease

(2011) Julie G. Donaldson et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Autoregulatory and repressive inputs localize Hydra Wnt3 to the head organizer

(2011) Y. Nakamura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative Analysis of Proteome and Transcriptome Variation in Mouse

(2011) Anatole Ghazalpour et al.   PLoS Genetics

Intersectin 1 forms complexes with SGIP1 and Reps1 in clathrin-coated pits

(2010) Oleksandr Dergai et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Wnt Signaling Requires Sequestration of Glycogen Synthase Kinase 3 inside Multivesicular Endosomes

(2010) Vincent F. Taelman et al.   CELL

The Hydra polyp: Nothing but an active stem cell community

(2010) Thomas C. G. Bosch et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

14-3-3 Proteins Regulate Protein Kinase A Activity to Modulate Growth Cone Turning Responses

(2010) C. B. Kent et al.   JOURNAL OF NEUROSCIENCE

Optimized IMAC−IMAC Protocol for Phosphopeptide Recovery from Complex Biological Samples

(2010) Juanying Ye et al.   JOURNAL OF PROTEOME RESEARCH

The Evolution of Extracellular Matrix

(2010) Suat Özbek et al.   MOLECULAR BIOLOGY OF THE CELL

Phylogeny and biogeography of Hydra (Cnidaria: Hydridae) using mitochondrial and nuclear DNA sequences

(2010) D.E. Martínez et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The dynamic genome of Hydra

(2010) Jarrod A. Chapman et al.   NATURE

A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns

(2010) Tomislav Domazet-Lošo et al.   NATURE

Advances in understanding tissue regenerative capacity and mechanisms in animals

(2010) Kenneth D. Poss   NATURE REVIEWS GENETICS

FoxO and Stress Responses in the Cnidarian Hydra vulgaris

(2010) Diane Bridge et al.   PLoS One

A genomic view of 500 million years of cnidarian evolution

(2010) Robert E. Steele et al.   TRENDS IN GENETICS

Neuron Specific Rab4 Effector GRASP-1 Coordinates Membrane Specialization and Maturation of Recycling Endosomes

(2010) Casper C. Hoogenraad et al.   PLOS BIOLOGY

FAM/USP9x, a Deubiquitinating Enzyme Essential for TGFβ Signaling, Controls Smad4 Monoubiquitination

(2009) Sirio Dupont et al.   CELL

Cytokine/Jak/Stat Signaling Mediates Regeneration and Homeostasis in the Drosophila Midgut

(2009) Huaqi Jiang et al.   CELL

Origins of neurogenesis, a cnidarian view

(2009) Brigitte Galliot et al.   DEVELOPMENTAL BIOLOGY

Multiple Wnts are involved in Hydra organizer formation and regeneration

(2009) Tobias Lengfeld et al.   DEVELOPMENTAL BIOLOGY

Apoptotic Cells Provide an Unexpected Source of Wnt3 Signaling to Drive Hydra Head Regeneration

(2009) Simona Chera et al.   DEVELOPMENTAL CELL

Integrating multiple 'omics' analysis for microbial biology: application and methodologies

(2009) W. Zhang et al.   MICROBIOLOGY-SGM

Dynamic expression of epidermal caspase 8 simulates a wound healing response

(2009) Pedro Lee et al.   NATURE

System-wide molecular evidence for phenotypic buffering in Arabidopsis

(2009) Jingyuan Fu et al.   NATURE GENETICS

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS

Multiple transcription factor codes activate epidermal wound-response genes in Drosophila

(2009) J. C. Pearson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative Aspects of Animal Regeneration

(2008) Jeremy P. Brockes et al.   Annual Review of Cell and Developmental Biology

Ski and SnoN, potent negative regulators of TGF-β signaling

(2008) Julien Deheuninck et al.   CELL RESEARCH

A Wnt-FoxQ2-Nodal Pathway Links Primary and Secondary Axis Specification in Sea Urchin Embryos

(2008) Shunsuke Yaguchi et al.   DEVELOPMENTAL CELL

β-Arrestin and casein kinase 1/2 define distinct branches of non-canonical WNT signalling pathways

(2008) Vít\[ebreve]zslav Bryja et al.   EMBO REPORTS

An Fgf/Gremlin inhibitory feedback loop triggers termination of limb bud outgrowth

(2008) Jamie M. Verheyden et al.   NATURE

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY