Systematic Characterization and Prediction of Post-Translational Modification Cross-Talk

Large Scale Analysis of Co-existing Post-translational Modifications in Histone Tails Reveals Global Fine Structure of Cross-talk

(2014) Veit Schwämmle et al.   MOLECULAR & CELLULAR PROTEOMICS

PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins

(2014) Pablo Minguez et al.   NUCLEIC ACIDS RESEARCH

InParanoid 8: orthology analysis between 273 proteomes, mostly eukaryotic

(2014) Erik L.L. Sonnhammer et al.   NUCLEIC ACIDS RESEARCH

Functional Divergence and Evolutionary Turnover in Mammalian Phosphoproteomes

(2014) Luca Freschi et al.   PLoS Genetics

Identification of Enriched PTM Crosstalk Motifs from Large-Scale Experimental Data Sets

(2013) Mao Peng et al.   JOURNAL OF PROTEOME RESEARCH

Regulation of Protein Degradation by O-GlcNAcylation: Crosstalk with Ubiquitination

(2013) Hai-Bin Ruan et al.   MOLECULAR & CELLULAR PROTEOMICS

Discovery of Histone Modification Crosstalk Networks by Stable Isotope Labeling of Amino Acids in Cell Culture Mass Spectrometry (SILAC MS)

(2013) Xiaoyan Guan et al.   MOLECULAR & CELLULAR PROTEOMICS

Evolution and functional cross-talk of protein post-translational modifications

(2013) Pedro Beltrao et al.   Molecular Systems Biology

Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation

(2013) Danielle L Swaney et al.   NATURE METHODS

Emerging methods in protein co-evolution

(2013) David de Juan et al.   NATURE REVIEWS GENETICS

eggNOG v4.0: nested orthology inference across 3686 organisms

(2013) Sean Powell et al.   NUCLEIC ACIDS RESEARCH

The switches.ELM Resource: A Compendium of Conditional Regulatory Interaction Interfaces

(2013) K. Van Roey et al.   Science Signaling

Aurora A mediates cross-talk between N- and C-terminal post-translational modifications of p53

(2012) Lorna Jane Warnock et al.   CANCER BIOLOGY & THERAPY

Systematic Functional Prioritization of Protein Posttranslational Modifications

(2012) Pedro Beltrao et al.   CELL

Deciphering a global network of functionally associated post-translational modifications

(2012) Pablo Minguez et al.   Molecular Systems Biology

Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium

(2012) Vera van Noort et al.   Molecular Systems Biology

Src tyrosine kinase phosphorylation of nuclear receptor HNF4  correlates with isoform-specific loss of HNF4  in human colon cancer

(2012) K. Chellappa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Allosteric post-translational modification codes

(2012) Ruth Nussinov et al.   TRENDS IN BIOCHEMICAL SCIENCES

Kinase Consensus Sequences: A Breeding Ground for Crosstalk

(2011) Heather L. Rust et al.   ACS Chemical Biology

Cross Talk Between O-GlcNAcylation and Phosphorylation: Roles in Signaling, Transcription, and Chronic Disease

(2011) Gerald W. Hart et al.   Annual Review of Biochemistry

Histone demethylases in chromatin cross-talks

(2011) Laure Verrier et al.   BIOLOGY OF THE CELL

PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse

(2011) P. V. Hornbeck et al.   NUCLEIC ACIDS RESEARCH

Bioinformatic Analysis and Post-Translational Modification Crosstalk Prediction of Lysine Acetylation

(2011) Zhike Lu et al.   PLoS One

Arginine methylation of BCL-2 antagonist of cell death (BAD) counteracts its phosphorylation and inactivation by Akt

(2011) J.-i. Sakamaki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A methylation and phosphorylation switch between an adjacent lysine and serine determines human DNMT1 stability

(2010) Pierre-Olivier Estève et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A Phosphorylation Cascade Controls the Degradation of Active SREBP1

(2009) Maria T. Bengoechea-Alonso et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Weak functional constraints on phosphoproteomes

(2009) Christian R. Landry et al.   TRENDS IN GENETICS

A Histone Code for Chromatin Assembly

(2008) Jeffrey Fillingham et al.   CELL

Arginine Methylation of FOXO Transcription Factors Inhibits Their Phosphorylation by Akt

(2008) Kazuyuki Yamagata et al.   MOLECULAR CELL