Explicit Expression for the Steady-State Translation Rate in the Infinite-Dimensional Homogeneous Ribosome Flow Model

Ribosome flow model with positive feedback

(2013) M. Margaliot et al.   Journal of the Royal Society Interface

Non-optimal codon usage affects expression, structure and function of clock protein FRQ

(2013) Mian Zhou et al.   NATURE

Non-optimal codon usage is a mechanism to achieve circadian clock conditionality

(2013) Yao Xu et al.   NATURE

New Universal Rules of Eukaryotic Translation Initiation Fidelity

(2013) Hadas Zur et al.   PLoS Computational Biology

On the Steady-State Distribution in the Homogeneous Ribosome Flow Model

(2012) Michael Margaliot et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Stability Analysis of the Ribosome Flow Model

(2012) Michael Margaliot et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Efficient Manipulations of Synonymous Mutations for Controlling Translation Rate: An Analytical Approach

(2012) Alexandra Dana et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Genes adopt non-optimal codon usage to generate cell cycle-dependent oscillations in protein levels

(2012) Milana Frenkel-Morgenstern et al.   Molecular Systems Biology

Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution

(2012) S. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

(2011) Nicholas T. Ingolia et al.   CELL

A Statistical Mechanics-Based Framework to Analyze Ad Hoc Networks with Random Access

(2011) S. Srinivasa et al.   IEEE TRANSACTIONS ON MOBILE COMPUTING

Modeling Translation in Protein Synthesis with TASEP: A Tutorial and Recent Developments

(2011) R. K. P. Zia et al.   JOURNAL OF STATISTICAL PHYSICS

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Genome-Scale Analysis of Translation Elongation with a Ribosome Flow Model

(2011) Shlomi Reuveni et al.   PLoS Computational Biology

Composite effects of gene determinants on the translation speed and density of ribosomes

(2011) Tamir Tuller et al.   GENOME BIOLOGY

An Evolutionarily Conserved Mechanism for Controlling the Efficiency of Protein Translation

(2010) Tamir Tuller et al.   CELL

On Relevance of Codon Usage to Expression of Synthetic and Natural Genes in Escherichia coli

(2010) F. Supek et al.   GENETICS

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

Translation efficiency is determined by both codon bias and folding energy

(2010) Tamir Tuller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conditions for global stability of monotone tridiagonal systems with negative feedback

(2010) Liming Wang et al.   SYSTEMS & CONTROL LETTERS

Coding-Sequence Determinants of Gene Expression in Escherichia coli

(2009) G. Kudla et al.   SCIENCE

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

(2009) N. T. Ingolia et al.   SCIENCE

Oscillations in I/O Monotone Systems Under Negative Feedback

(2008) David Angeli et al.   IEEE TRANSACTIONS ON AUTOMATIC CONTROL