Dark matter in archaeal genomes: a rich source of novel mobile elements, defense systems and secretory complexes
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Dark matter in archaeal genomes: a rich source of novel mobile elements, defense systems and secretory complexes
Authors
Keywords
Archaeal genomes, ORFans, Genomic islands, Integration, Viruses, Defense
Journal
EXTREMOPHILES
Volume 18, Issue 5, Pages 877-893
Publisher
Springer Nature
Online
2014-08-11
DOI
10.1007/s00792-014-0672-7
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The basic building blocks and evolution of CRISPR–Cas systems
- (2015) Kira S. Makarova et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- Gammasphaerolipovirus, a newly proposed bacteriophage genus, unifies viruses of halophilic archaea and thermophilic bacteria within the novel family Sphaerolipoviridae
- (2014) Alice Pawlowski et al. ARCHIVES OF VIROLOGY
- Molecular biology of fuselloviruses and their satellites
- (2014) Patrizia Contursi et al. EXTREMOPHILES
- DNA-guided DNA interference by a prokaryotic Argonaute
- (2014) Daan C. Swarts et al. NATURE
- A guide to genome engineering with programmable nucleases
- (2014) Hyongbum Kim et al. NATURE REVIEWS GENETICS
- A highly divergent archaeo-eukaryotic primase from the Thermococcus nautilus plasmid, pTN2
- (2014) Sukhvinder Gill et al. NUCLEIC ACIDS RESEARCH
- The Wonderful World of Archaeal Viruses
- (2013) David Prangishvili Annual Review of Microbiology
- Genomics and biology of Rudiviruses, a model for the study of virus–host interactions in Archaea
- (2013) David Prangishvili et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- Functional Interactions of VirB11 Traffic ATPases with VirB4 and VirD4 Molecular Motors in Type IV Secretion Systems
- (2013) J. Ripoll-Rozada et al. JOURNAL OF BACTERIOLOGY
- Tlys, a Newly Identified Sulfolobus Spindle-Shaped Virus 1 Transcript Expressed in the Lysogenic State, Encodes a DNA-Binding Protein Interacting at the Promoters of the Early Genes
- (2013) S. Fusco et al. JOURNAL OF VIROLOGY
- Unification of the Globally Distributed Spindle-Shaped Viruses of the Archaea
- (2013) M. Krupovic et al. JOURNAL OF VIROLOGY
- Bacterial Argonaute Samples the Transcriptome to Identify Foreign DNA
- (2013) Ivan Olovnikov et al. MOLECULAR CELL
- Comparative genomics of defense systems in archaea and bacteria
- (2013) Kira S. Makarova et al. NUCLEIC ACIDS RESEARCH
- Insights into Dynamics of Mobile Genetic Elements in Hyperthermophilic Environments from Five New Thermococcus Plasmids
- (2013) Mart Krupovic et al. PLoS One
- CRISPR-Cas
- (2013) Eugene V. Koonin et al. RNA Biology
- Bacteriophage P23-77 Capsid Protein Structures Reveal the Archetype of an Ancient Branch from a Major Virus Lineage
- (2013) Ilona Rissanen et al. STRUCTURE
- Unipro UGENE: a unified bioinformatics toolkit
- (2012) Konstantin Okonechnikov et al. BIOINFORMATICS
- Comprehensive comparative-genomic analysis of Type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes
- (2012) Kira S Makarova et al. Biology Direct
- Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer
- (2012) Yuri I Wolf et al. Biology Direct
- Evolution of Conjugation and Type IV Secretion Systems
- (2012) Julien Guglielmini et al. MOLECULAR BIOLOGY AND EVOLUTION
- Diversity, assembly and regulation of archaeal type IV pili-like and non-type-IV pili-like surface structures
- (2012) Kerstin Lassak et al. RESEARCH IN MICROBIOLOGY
- The archaellum: an old motility structure with a new name
- (2012) Ken F. Jarrell et al. TRENDS IN MICROBIOLOGY
- CRISPR: New Horizons in Phage Resistance and Strain Identification
- (2012) Rodolphe Barrangou et al. Annual Review of Food Science and Technology
- A genetic study of SSV1, the prototypical fusellovirus
- (2012) Eric Iverson et al. Frontiers in Microbiology
- Structure and function of the primase domain of the replication protein from the archaeal plasmid pRN1
- (2011) Georg Lipps BIOCHEMICAL SOCIETY TRANSACTIONS
- A thaumarchaeal provirus testifies for an ancient association of tailed viruses with archaea
- (2011) Mart Krupovic et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems
- (2011) Kira S Makarova et al. Biology Direct
- TPV1, the first virus isolated from the hyperthermophilic genus Thermococcus
- (2011) Aurore Gorlas et al. ENVIRONMENTAL MICROBIOLOGY
- Provirus Induction in Hyperthermophilic Archaea: Characterization of Aeropyrum pernix Spindle-Shaped Virus 1 and Aeropyrum pernix Ovoid Virus 1
- (2011) T. Mochizuki et al. JOURNAL OF BACTERIOLOGY
- Defense Islands in Bacterial and Archaeal Genomes and Prediction of Novel Defense Systems
- (2011) K. S. Makarova et al. JOURNAL OF BACTERIOLOGY
- SignalP 4.0: discriminating signal peptides from transmembrane regions
- (2011) Thomas Nordahl Petersen et al. NATURE METHODS
- Evolution and classification of the CRISPR–Cas systems
- (2011) Kira S. Makarova et al. NATURE REVIEWS MICROBIOLOGY
- Microviridae Goes Temperate: Microvirus-Related Proviruses Reside in the Genomes of Bacteroidetes
- (2011) Mart Krupovic et al. PLoS One
- Identification of a bifunctional primase–polymerase domain of corynephage BFK20 replication protein gp43
- (2011) Nora Halgasova et al. VIRUS RESEARCH
- Genetic and Mass Spectrometry Analyses of the Unusual Type IV-Like Pili of the Archaeon Methanococcus maripaludis
- (2010) S. Y. M. Ng et al. JOURNAL OF BACTERIOLOGY
- The Evolutionary History of Archaeal MCM Helicases: A Case Study of Vertical Evolution Combined with Hitchhiking of Mobile Genetic Elements
- (2010) M. Krupovic et al. MOLECULAR BIOLOGY AND EVOLUTION
- CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
- (2010) Luciano A. Marraffini et al. NATURE REVIEWS GENETICS
- Four newly isolated fuselloviruses from extreme geothermal environments reveal unusual morphologies and a possible interviral recombination mechanism
- (2009) Peter Redder et al. ENVIRONMENTAL MICROBIOLOGY
- Biological Diversity of Prokaryotic Type IV Secretion Systems
- (2009) C. E. Alvarez-Martinez et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes
- (2009) Diego Cortez et al. GENOME BIOLOGY
- Molecular modeling and functional characterization of the monomeric primase-polymerase domain from the Sulfolobus solfataricus plasmid pIT3
- (2008) Santina Prato et al. FEBS Journal
- Virus evolution: how far does the double β-barrel viral lineage extend?
- (2008) Mart Krupovič et al. NATURE REVIEWS MICROBIOLOGY
- Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world
- (2008) E. V. Koonin et al. NUCLEIC ACIDS RESEARCH
- PROMALS3D: a tool for multiple protein sequence and structure alignments
- (2008) Jimin Pei et al. NUCLEIC ACIDS RESEARCH
- CDD: specific functional annotation with the Conserved Domain Database
- (2008) A. Marchler-Bauer et al. NUCLEIC ACIDS RESEARCH
- Archaeal proviruses TKV4 and MVV extend the PRD1-adenovirus lineage to the phylum Euryarchaeota
- (2008) Mart Krupovič et al. VIROLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started