Drivers of microbial community structure in forest soils

A global atlas of the dominant bacteria found in soil

(2018) Manuel Delgado-Baquerizo et al.   SCIENCE

Bacterial microbiomes of individual ectomycorrhizal Pinus sylvestris roots are shaped by soil horizon and differentially sensitive to nitrogen addition

(2017) Srisailam Marupakula et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial ecology of mountain glacier ecosystems: biodiversity, ecological connections and implications of a warming climate

(2017) Scott Hotaling et al.   ENVIRONMENTAL MICROBIOLOGY

Differential sensitivity of total and active soil microbial communities to drought and forest management

(2017) Felipe Bastida et al.   GLOBAL CHANGE BIOLOGY

Biogeography and organic matter removal shape long-term effects of timber harvesting on forest soil microbial communities

(2017) Roland C Wilhelm et al.   ISME Journal

Dispersal alters bacterial diversity and composition in a natural community

(2017) Michaeline B N Albright et al.   ISME Journal

Forest Soil Bacteria: Diversity, Involvement in Ecosystem Processes, and Response to Global Change

(2017) Salvador Lladó et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

A decade of irrigation transforms the soil microbiome of a semi-arid pine forest

(2017) Martin Hartmann et al.   MOLECULAR ECOLOGY

Root chemical traits and their roles in belowground biotic interactions

(2017) Tomonori Tsunoda et al.   PEDOBIOLOGIA

Root exudation patterns in a beech forest: Dependence on soil depth, root morphology, and environment

(2017) Timo Tückmantel et al.   SOIL BIOLOGY & BIOCHEMISTRY

Detecting macroecological patterns in bacterial communities across independent studies of global soils

(2017) Kelly S. Ramirez et al.   Nature Microbiology

Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence

(2017) Y. Colin et al.   Scientific Reports

Root exudation of low-molecular-mass-organic acids by six tree species alters the dynamics of calcium and magnesium in soil

(2016) Tamihisa Ohta et al.   CANADIAN JOURNAL OF SOIL SCIENCE

Carbon content and climate variability drive global soil bacterial diversity patterns

(2016) Manuel Delgado-Baquerizo et al.   ECOLOGICAL MONOGRAPHS

Spatial scale drives patterns in soil bacterial diversity

(2016) Sarah L. O'Brien et al.   ENVIRONMENTAL MICROBIOLOGY

Ectomycorrhizal exudates and pre-exposure to elevated CO 2 affects soil bacterial growth and community structure

(2016) Petra Fransson et al.   Fungal Ecology

Stand scale variability of topsoil organic matter composition in a high-elevation Norway spruce forest ecosystem

(2016) Sandra Spielvogel et al.   GEODERMA

Forest understory plant and soil microbial response to an experimentally induced drought and heat-pulse event: the importance of maintaining the continuum

(2016) Isabell von Rein et al.   GLOBAL CHANGE BIOLOGY

Challenges in microbial ecology: building predictive understanding of community function and dynamics

(2016) Stefanie Widder et al.   ISME Journal

Substrate quality affects kinetics and catalytic efficiency of exo-enzymes in rhizosphere and detritusphere

(2016) Sebastian Loeppmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Substrate availability drives spatial patterns in richness of ammonia-oxidizing bacteria and archaea in temperate forest soils

(2016) J.S. Norman et al.   SOIL BIOLOGY & BIOCHEMISTRY

Temperature mediates continental-scale diversity of microbes in forest soils

(2016) Jizhong Zhou et al.   Nature Communications

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

Fine Spatial Scale Variation of Soil Microbial Communities under European Beech and Norway Spruce

(2016) Heiko Nacke et al.   Frontiers in Microbiology

Specific impacts of beech and Norway spruce on the structure and diversity of the rhizosphere and soil microbial communities

(2016) S. Uroz et al.   Scientific Reports

Driving forces of soil bacterial community structure, diversity, and function in temperate grasslands and forests

(2016) Kristin Kaiser et al.   Scientific Reports

Terracidiphilus gabretensis gen. nov., sp. nov., an Abundant and Active Forest Soil Acidobacterium Important in Organic Matter Transformation

(2015) Paula García-Fraile et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Functional screening of abundant bacteria from acidic forest soil indicates the metabolic potential of Acidobacteria subdivision 1 for polysaccharide decomposition

(2015) Salvador Lladó et al.   BIOLOGY AND FERTILITY OF SOILS

Greater than the sum of their parts: characterizing plant microbiomes at the community-level

(2015) Sarah L Lebeis   CURRENT OPINION IN PLANT BIOLOGY

Drivers of bacterial beta diversity in two temperate forests

(2015) Xugao Wang et al.   ECOLOGICAL RESEARCH

Analysis of single root tip microbiomes suggests that distinctive bacterial communities are selected by P inus sylvestris roots colonized by different ectomycorrhizal fungi

(2015) Srisailam Marupakula et al.   ENVIRONMENTAL MICROBIOLOGY

Rhizosphere processes are quantitatively important components of terrestrial carbon and nutrient cycles

(2015) Adrien C. Finzi et al.   GLOBAL CHANGE BIOLOGY

Soil Parameters Drive the Structure, Diversity and Metabolic Potentials of the Bacterial Communities Across Temperate Beech Forest Soil Sequences

(2015) M. Jeanbille et al.   MICROBIAL ECOLOGY

Habitat Fragmentation can Modulate Drought Effects on the Plant-soil-microbial System in Mediterranean Holm Oak (Quercus ilex) Forests

(2015) Dulce Flores-Rentería et al.   MICROBIAL ECOLOGY

Antifungal Rhizosphere Bacteria Can increase as Response to the Presence of Saprotrophic Fungi

(2015) Wietse de Boer et al.   PLoS One

The bacterial community inhabiting temperate deciduous forests is vertically stratified and undergoes seasonal dynamics

(2015) Rubén López-Mondéjar et al.   SOIL BIOLOGY & BIOCHEMISTRY

Organic acid induced release of nutrients from metal-stabilized soil organic matter – The unbutton model

(2015) Marianne Clarholm et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial hotspots and hot moments in soil: Concept & review

(2015) Yakov Kuzyakov et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effects of tree identity dominate over tree diversity on the soil microbial community structure

(2015) Andrea Scheibe et al.   SOIL BIOLOGY & BIOCHEMISTRY

Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees

(2015) Michaela Urbanová et al.   SOIL BIOLOGY & BIOCHEMISTRY

Forest Management Type Influences Diversity and Community Composition of Soil Fungi across Temperate Forest Ecosystems

(2015) Kezia Goldmann et al.   Frontiers in Microbiology

Microbial genomics, transcriptomics and proteomics: new discoveries in decomposition research using complementary methods

(2014) Petr Baldrian et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Taxonomical and functional microbial community selection in soybean rhizosphere

(2014) Lucas W Mendes et al.   ISME Journal

Endemism and functional convergence across the North American soil mycobiome

(2014) J. M. Talbot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Soil properties and tree species drive ß-diversity of soil bacterial communities

(2014) William J. Landesman et al.   SOIL BIOLOGY & BIOCHEMISTRY

Going underground: root traits as drivers of ecosystem processes

(2014) Richard D. Bardgett et al.   TRENDS IN ECOLOGY & EVOLUTION

Global drivers and patterns of microbial abundance in soil

(2013) Hector M. Serna-Chavez et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Changes in assembly processes in soil bacterial communities following a wildfire disturbance

(2013) Scott Ferrenberg et al.   ISME Journal

Application of Natural Blends of Phytochemicals Derived from the Root Exudates ofArabidopsisto the Soil Reveal That Phenolic-related Compounds Predominantly Modulate the Soil Microbiome

(2013) Dayakar V. Badri et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Correction: Root Exudation of Phytochemicals in Arabidopsis Follows Specific Patterns That Are Developmentally Programmed and Correlate with Soil Microbial Functions

(2013) Jacqueline M. Chaparro et al.   PLoS One

Seasonal differences in tree species' influence on soil microbial communities

(2013) Carolin Thoms et al.   SOIL BIOLOGY & BIOCHEMISTRY

Roots from beech (Fagus sylvatica L.) and ash (Fraxinus excelsior L.) differentially affect soil microorganisms and carbon dynamics

(2013) Simone Cesarz et al.   SOIL BIOLOGY & BIOCHEMISTRY

Translocation of metals by trees and fungi regulates pH, soil organic matter turnover and nitrogen availability in acidic forest soils

(2013) Marianne Clarholm et al.   SOIL BIOLOGY & BIOCHEMISTRY

Strong functional stability of soil microbial communities under semiarid Mediterranean conditions and subjected to long-term shifts in baseline precipitation

(2013) J. Curiel Yuste et al.   SOIL BIOLOGY & BIOCHEMISTRY

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

Dominant trees affect microbial community composition and activity in post-mining afforested soils

(2012) Jaroslav Šnajdr et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil pH drives the spatial distribution of bacterial communities along elevation on Changbai Mountain

(2012) Congcong Shen et al.   SOIL BIOLOGY & BIOCHEMISTRY

The Effect of Restoration Treatments on the Spatial Variability of Soil Processes under Longleaf Pine Trees

(2012) Martin Lavoie et al.   Forests

Importance of root derived carbon for soil organic matter storage in a temperate old-growth beech forest – Evidence from C, N and 14C content

(2011) Cindy Tefs et al.   FOREST ECOLOGY AND MANAGEMENT

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

(2011) Petr Baldrian et al.   ISME Journal

Temporal dynamics of exchangeable K, Ca and Mg in acidic bulk soil and rhizosphere under Norway spruce (Picea abies Karst.) and beech (Fagus sylvatica L.) stands

(2011) Christelle Collignon et al.   PLANT AND SOIL

Effects of beech (Fagus sylvatica), ash (Fraxinus excelsior) and lime (Tilia spec.) on soil chemical properties in a mixed deciduous forest

(2011) Christina Langenbruch et al.   PLANT AND SOIL

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinctive fungal and bacterial communities are associated with mats formed by ectomycorrhizal fungi

(2011) Laurel A. Kluber et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil moisture is the major factor influencing microbial community structure and enzyme activities across seven biogeoclimatic zones in western Canada

(2011) Beth F.T. Brockett et al.   SOIL BIOLOGY & BIOCHEMISTRY

Experimental tests of the bacterial distance–decay relationship

(2010) Thomas Bell   ISME Journal

Ectomycorrhizal mats alter forest soil biogeochemistry

(2010) Laurel A. Kluber et al.   SOIL BIOLOGY & BIOCHEMISTRY

Direct and indirect effects of tree diversity drive soil microbial diversity in temperate deciduous forest

(2010) Carolin Thoms et al.   SOIL BIOLOGY & BIOCHEMISTRY

Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil

(2010) Stéphane Uroz et al.   Environmental Microbiology Reports

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

(2009) Ryan T Jones et al.   ISME Journal

The rhizosphere zoo: An overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi, and of some of their structuring factors

(2009) M. Buée et al.   PLANT AND SOIL

Microbes on mountainsides: Contrasting elevational patterns of bacterial and plant diversity

(2008) J. A. Bryant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY