Bacterial microbiomes of individual ectomycorrhizal Pinus sylvestris roots are shaped by soil horizon and differentially sensitive to nitrogen addition

The effect of roots and easily available carbon on the decomposition of soil organic matter fractions in boreal forest soil

(2017) J. Pumpanen et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Shift in fungal communities and associated enzyme activities along an age gradient of managed Pinus sylvestris stands

(2017) Julia Kyaschenko et al.   ISME Journal

Ancestral alliances: Plant mutualistic symbioses with fungi and bacteria

(2017) Francis M. Martin et al.   SCIENCE

How does the tree root microbiome assemble? Influence of ectomycorrhizal species on P inus sylvestris root bacterial communities

(2016) Aurélie Deveau   ENVIRONMENTAL MICROBIOLOGY

Tamm Review: Revisiting the influence of nitrogen deposition on Swedish forests

(2016) Dan Binkley et al.   FOREST ECOLOGY AND MANAGEMENT

Ericoid Roots and Mycospheres Govern Plant-Specific Bacterial Communities in Boreal Forest Humus

(2016) Sari Timonen et al.   MICROBIAL ECOLOGY

Pseudomonas fluorescens C7R12 type III secretion system impacts mycorrhization of Medicago truncatula and associated microbial communities

(2016) Amandine Viollet et al.   MYCORRHIZA

Ecology of the forest microbiome: Highlights of temperate and boreal ecosystems

(2016) S. Uroz et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil type determines the distribution of nutrient mobilizing bacterial communities in the rhizosphere of beech trees

(2016) O. Nicolitch et al.   SOIL BIOLOGY & BIOCHEMISTRY

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

(2015) Davide Bulgarelli et al.   Cell Host & Microbe

Analysis of single root tip microbiomes suggests that distinctive bacterial communities are selected by P inus sylvestris roots colonized by different ectomycorrhizal fungi

(2015) Srisailam Marupakula et al.   ENVIRONMENTAL MICROBIOLOGY

Soil Parameters Drive the Structure, Diversity and Metabolic Potentials of the Bacterial Communities Across Temperate Beech Forest Soil Sequences

(2015) M. Jeanbille et al.   MICROBIAL ECOLOGY

The Microbiome of Pinus muricata Ectomycorrhizae: Community Assemblages, Fungal Species Effects, and Burkholderia as Important Bacteria in Multipartnered Symbioses

(2015) Nhu H. Nguyen et al.   MICROBIAL ECOLOGY

Changes in fungal communities along a boreal forest soil fertility gradient

(2015) Erica Sterkenburg et al.   NEW PHYTOLOGIST

The importance of the microbiome of the plant holobiont

(2015) Philippe Vandenkoornhuyse et al.   NEW PHYTOLOGIST

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The bacterial community inhabiting temperate deciduous forests is vertically stratified and undergoes seasonal dynamics

(2015) Rubén López-Mondéjar et al.   SOIL BIOLOGY & BIOCHEMISTRY

Carbon sequestration is related to mycorrhizal fungal community shifts during long-term succession in boreal forests

(2014) Karina E. Clemmensen et al.   NEW PHYTOLOGIST

Fungal and bacterial community responses to Suillus variegtus extraradical mycelia and soil profile in Scots pine microcosms

(2014) Petra Fransson et al.   PLANT AND SOIL

Influence of Soil Type, Cultivar and Verticillium dahliae on the Structure of the Root and Rhizosphere Soil Fungal Microbiome of Strawberry

(2014) Srivathsa Nallanchakravarthula et al.   PLoS One

Soil properties and tree species drive ß-diversity of soil bacterial communities

(2014) William J. Landesman et al.   SOIL BIOLOGY & BIOCHEMISTRY

Fungal but not bacterial soil communities recover after termination of decadal nitrogen additions to boreal forest

(2014) Mona N. Högberg et al.   SOIL BIOLOGY & BIOCHEMISTRY

Burkholderia terrae BS001 migrates proficiently with diverse fungal hosts through soil and provides protection from antifungal agents

(2014) Rashid Nazir et al.   Frontiers in Microbiology

Soil bacterial community composition altered by increased nutrient availability in Arctic tundra soils

(2014) Akihiro Koyama et al.   Frontiers in Microbiology

Newly identified helper bacteria stimulate ectomycorrhizal formation in Populus

(2014) Jessy L. Labbé et al.   Frontiers in Plant Science

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

Relations among soil microbial community composition, nitrogen turnover, and tree growth in N-loaded and previously N-loaded boreal spruce forest

(2013) Róbert Blaško et al.   FOREST ECOLOGY AND MANAGEMENT

Increased hyphal branching and growth of ectomycorrhizal fungus Lactarius rufus by the helper bacterium Paenibacillus sp

(2013) T. J. Aspray et al.   MYCORRHIZA

Seasonal dynamics of fungal communities in a temperate oak forest soil

(2013) Jana Voříšková et al.   NEW PHYTOLOGIST

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Functional Assays and Metagenomic Analyses Reveals Differences between the Microbial Communities Inhabiting the Soil Horizons of a Norway Spruce Plantation

(2013) Stéphane Uroz et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives

(2013) K. Schlaeppi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A short-term mineral amendment impacts the mineral weathering bacterial communities in an acidic forest soil

(2013) C. Lepleux et al.   RESEARCH IN MICROBIOLOGY

Different bacterial communities in ectomycorrhizae and surrounding soil

(2013) Unni Vik et al.   Scientific Reports

Distinct Ectomycorrhizospheres Share Similar Bacterial Communities as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

(2012) S. Uroz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Correlation of the Abundance of Betaproteobacteria on Mineral Surfaces with Mineral Weathering in Forest Soils

(2012) C. Lepleux et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Production of fungal and bacterial growth modulating secondary metabolites is widespread among mycorrhiza-associated streptomycetes

(2012) Silvia D Schrey et al.   BMC MICROBIOLOGY

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Chronic N-amended soils exhibit an altered bacterial community structure in Harvard Forest, MA, USA

(2012) Swathi A. Turlapati et al.   FEMS MICROBIOLOGY ECOLOGY

Suillus mycelia under elevated atmospheric CO2 support increased bacterial communities and scarce nifH gene activity in contrast to Hebeloma mycelia

(2012) Hironari Izumi et al.   MYCORRHIZA

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Dramatic changes in ectomycorrhizal community composition, root tip abundance and mycelial production along a stand-scale nitrogen deposition gradient

(2012) Rasmus Kjøller et al.   NEW PHYTOLOGIST

The capacity to comigrate with Lyophyllum sp. strain Karsten through different soils is spread among several phylogenetic groups within the genus Burkholderia

(2012) Rashid Nazir et al.   SOIL BIOLOGY & BIOCHEMISTRY

Digging deeper to find unique microbial communities: The strong effect of depth on the structure of bacterial and archaeal communities in soil

(2012) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

Tricholoma matsutake Dominates Diverse Microbial Communities in Different Forest Soils

(2011) Lu-Min Vaario et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Growth and carbon sequestration by ectomycorrhizal fungi in intensively fertilized Norway spruce forests

(2011) H. Wallander et al.   FOREST ECOLOGY AND MANAGEMENT

Conservation of ectomycorrhizal fungi: exploring the linkages between functional and taxonomic responses to anthropogenic N deposition

(2011) E.A. Lilleskov et al.   Fungal Ecology

Minerals Affect the Specific Diversity of Forest Soil Bacterial Communities

(2011) S. Uroz et al.   GEOMICROBIOLOGY JOURNAL

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

(2011) Petr Baldrian et al.   ISME Journal

Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering

(2011) W. J. Sul et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial weathering and its contribution to nutrient cycling in temperate forest ecosystems

(2011) Stéphane Uroz et al.   RESEARCH IN MICROBIOLOGY

Long term impact of mineral amendment on the distribution of the mineral weathering associated bacterial communities from the beech Scleroderma citrinum ectomycorrhizosphere

(2011) S. Uroz et al.   SOIL BIOLOGY & BIOCHEMISTRY

Bacterial Communities Associated with the Lichen Symbiosis

(2010) Scott T. Bates et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Nitrogen availability is a primary determinant of conifer mycorrhizas across complex environmental gradients

(2010) Filipa Cox et al.   ECOLOGY LETTERS

Ectomycorrhizal roots select distinctive bacterial and ascomycete communities in Swedish subarctic forests

(2010) Hironari Izumi et al.   ENVIRONMENTAL MICROBIOLOGY

Disruption of root carbon transport into forest humus stimulates fungal opportunists at the expense of mycorrhizal fungi

(2010) Björn D Lindahl et al.   ISME Journal

Quantification of effects of season and nitrogen supply on tree below-ground carbon transfer to ectomycorrhizal fungi and other soil organisms in a boreal pine forest

(2010) Mona N. Högberg et al.   NEW PHYTOLOGIST

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hitchhikers on the fungal highway: The helper effect for bacterial migration via fungal hyphae

(2010) J.A. Warmink et al.   SOIL BIOLOGY & BIOCHEMISTRY

Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil

(2010) Stéphane Uroz et al.   Environmental Microbiology Reports

Pseudomonas fluorescens BBc6R8 type III secretion mutants no longer promote ectomycorrhizal symbiosis

(2010) Angela M. Cusano et al.   Environmental Microbiology Reports

Plants, Mycorrhizal Fungi, and Bacteria: A Network of Interactions

(2009) Paola Bonfante et al.   Annual Review of Microbiology

Migratory Response of Soil Bacteria to Lyophyllum sp. Strain Karsten in Soil Microcosms

(2009) J. A. Warmink et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylogenetic diversity of non-nodulating Rhizobium  associated with pine ectomycorrhizae

(2009) Megumi Tanaka et al.   FEMS MICROBIOLOGY ECOLOGY

Mechanisms that promote bacterial fitness in fungal-affected soil microhabitats

(2009) Rashid Nazir et al.   FEMS MICROBIOLOGY ECOLOGY

Soil microbial community response to nitrogen enrichment in two scrub oak forests

(2009) Jennifer Adams Krumins et al.   FOREST ECOLOGY AND MANAGEMENT

Altered microbial community structure and organic matter composition under elevated CO2 and N fertilization in the duke forest

(2009) XIAOJUAN FENG et al.   GLOBAL CHANGE BIOLOGY

Quantitative analysis of soluble exudates produced by ectomycorrhizal roots as a response to ambient and elevated CO2

(2009) Emma M. Johansson et al.   SOIL BIOLOGY & BIOCHEMISTRY

Mineral weathering by bacteria: ecology, actors and mechanisms

(2009) Stéphane Uroz et al.   TRENDS IN MICROBIOLOGY

Universal and species-specific bacterial ‘fungiphiles’ in the mycospheres of different basidiomycetous fungi

(2008) J. A. Warmink et al.   ENVIRONMENTAL MICROBIOLOGY

Molecular analysis of bacterial communities associated with the roots of Douglas fir (Pseudotsuga menziesii) colonized by different ectomycorrhizal fungi

(2008) David J. Burke et al.   FEMS MICROBIOLOGY ECOLOGY

Bacteria associated with ectomycorrhizas of slash pine (Pinus elliottii) in south-eastern Queensland, Australia

(2008) Hironari Izumi et al.   FEMS MICROBIOLOGY LETTERS

Selection of bacterial populations in the mycosphere of Laccaria proxima: is type III secretion involved?

(2008) Jan Aaldrik Warmink et al.   ISME Journal

Quantitative analysis of root and ectomycorrhizal exudates as a response to Pb, Cd and As stress

(2008) Emma M. Johansson et al.   PLANT AND SOIL

Comparison of the bacterial communities established on the mycorrhizae formed on Pinus thunbergii root tips by eight species of fungi

(2008) Ryota Kataoka et al.   PLANT AND SOIL

Quantitative analysis of exudates from soil-living basidiomycetes in pure culture as a response to lead, cadmium and arsenic stress

(2008) Emma M. Johansson et al.   SOIL BIOLOGY & BIOCHEMISTRY

Bacterial and fungal response to nitrogen fertilization in three coniferous forest soils

(2007) Fredrik Demoling et al.   SOIL BIOLOGY & BIOCHEMISTRY