Biogeography and organic matter removal shape long-term effects of timber harvesting on forest soil microbial communities

Is the END (emulation of natural disturbance) a new beginning? A critical analysis of the use of fire regimes as the basis of forest ecosystem management with examples from the Canadian western Cordillera

(2016) Chris Stockdale et al.   ENVIRONMENTAL REVIEWS

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Is the END (emulation of natural disturbance) a new beginning? A critical analysis of the use of fire regimes as the basis of forest ecosystem management with examples from the Canadian western Cordillera

(2016) Chris Stockdale et al.   ENVIRONMENTAL REVIEWS

Relic DNA is abundant in soil and obscures estimates of soil microbial diversity

(2016) Paul Carini et al.   Nature Microbiology

Soil fungal communities respond compositionally to recurring frequent prescribed burning in a managed southeastern US forest ecosystem

(2015) Alena K. Oliver et al.   FOREST ECOLOGY AND MANAGEMENT

Quantifying consequences of removing harvesting residues on forest soils and tree growth – A meta-analysis

(2015) D.L. Achat et al.   FOREST ECOLOGY AND MANAGEMENT

Microbial Diversity in Soil, Sand Dune and Rock Substrates of the Thar Monsoon Desert, India

(2015) Subramanya Rao et al.   INDIAN JOURNAL OF MICROBIOLOGY

Long-term effects of timber harvesting on hemicellulolytic microbial populations in coniferous forest soils

(2015) Hilary T C Leung et al.   ISME Journal

Forest harvesting reduces the soil metagenomic potential for biomass decomposition

(2015) Erick Cardenas et al.   ISME Journal

Non-symbiotic Bradyrhizobium ecotypes dominate North American forest soils

(2015) David VanInsberghe et al.   ISME Journal

Vertical distribution of the soil microbiota along a successional gradient in a glacier forefield

(2015) Thomas Rime et al.   MOLECULAR ECOLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Arbuscular mycorrhizal fungal communities show low resistance and high resilience to wildfire disturbance

(2015) Xingjia Xiang et al.   PLANT AND SOIL

Changes in biogeochemistry and carbon fluxes in a boreal forest after the clear-cutting and partial burning of slash

(2014) Liisa Kulmala et al.   AGRICULTURAL AND FOREST METEOROLOGY

Disturbance and diversity of wood-inhabiting fungi: effects of canopy gaps and downed woody debris

(2014) Nicholas J. Brazee et al.   BIODIVERSITY AND CONSERVATION

Contrasting soil fungal communities in Mediterranean pine forests subjected to different wildfire frequencies

(2014) Erika Buscardo et al.   FUNGAL DIVERSITY

Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest

(2014) Neslihan Taş et al.   ISME Journal

Responses of Soil Fungi to Logging and Oil Palm Agriculture in Southeast Asian Tropical Forests

(2014) K. L. McGuire et al.   MICROBIAL ECOLOGY

Endemism and functional convergence across the North American soil mycobiome

(2014) J. M. Talbot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid recovery of soil bacterial communities after wildfire in a Chinese boreal forest

(2014) Xingjia Xiang et al.   Scientific Reports

Tree growth ten years after residual biomass removal, soil compaction, tillage, and competing vegetation control in a highly-productive Douglas-fir plantation

(2013) Scott M. Holub et al.   FOREST ECOLOGY AND MANAGEMENT

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Bacterial composition of soils in ponderosa pine and mixed conifer forests exposed to different wildfire burn severity

(2013) Carolyn F. Weber et al.   SOIL BIOLOGY & BIOCHEMISTRY

A meta-analysis of soil microbial biomass responses to forest disturbances

(2013) Sandra R. Holden et al.   Frontiers in Microbiology

Retention Forestry to Maintain Multifunctional Forests: A World Perspective

(2012) Lena Gustafsson et al.   BIOSCIENCE

Diazotrophic bacteria reside inside Suillus tomentosus / Pinus contorta tuberculate ectomycorrhizae

(2012) Leslie R. Paul et al.   Botany

Changes in Soil Fungal Communities, Extracellular Enzyme Activities, and Litter Decomposition Across a Fire Chronosequence in Alaskan Boreal Forests

(2012) Sandra R. Holden et al.   ECOSYSTEMS

Effects of organic matter removal, soil compaction and vegetation control on 10th year biomass and foliar nutrition: LTSP continent-wide comparisons

(2012) Felix Ponder et al.   FOREST ECOLOGY AND MANAGEMENT

A molecular phylogeny of thermophilic fungi

(2012) Ingo Morgenstern et al.   Fungal Biology

Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous forests

(2012) Martin Hartmann et al.   ISME Journal

Multiple mechanisms for trait effects on litter decomposition: moving beyond home-field advantage with a new hypothesis

(2012) Grégoire T. Freschet et al.   JOURNAL OF ECOLOGY

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Long-term effects of clear-cutting and selective cutting on soil methane fluxes in a temperate spruce forest in southern Germany

(2011) Xing Wu et al.   ENVIRONMENTAL POLLUTION

Effects of forest biomass harvesting on soil productivity in boreal and temperate forests — A review

(2011) Evelyne Thiffault et al.   ENVIRONMENTAL REVIEWS

Response of methanotrophic communities to afforestation and reforestation in New Zealand

(2011) Loïc Nazaries et al.   ISME Journal

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Logging-residue extraction does not reduce the diversity of litter-layer saprotrophic fungi in three Swedish coniferous stands after 25 years

(2009) Johan Allmér et al.   CANADIAN JOURNAL OF FOREST RESEARCH

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Emulating natural disturbance regimes as a basis for forest management: A North American view

(2009) James N. Long   FOREST ECOLOGY AND MANAGEMENT

Soil biota accelerate decomposition in high-elevation forests by specializing in the breakdown of litter produced by the plant species above them

(2009) Edward Ayres et al.   JOURNAL OF ECOLOGY

A Major Clade of Prokaryotes with Ancient Adaptations to Life on Land

(2008) F. U. Battistuzzi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Influence of forest disturbance on CO2, CH4and N2O fluxes from larch forest soil in the permafrost taiga region of eastern Siberia

(2008) Fumiaki Takakai et al.   SOIL SCIENCE AND PLANT NUTRITION