标题
Ancient plant DNA in lake sediments
作者
关键词
-
出版物
NEW PHYTOLOGIST
Volume 214, Issue 3, Pages 924-942
出版商
Wiley
发表日期
2017-04-05
DOI
10.1111/nph.14470
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Cryptosporidium as a testbed for single cell genome characterization of unicellular eukaryotes
- (2016) Karin Troell et al. BMC GENOMICS
- From barcodes to genomes: extending the concept of DNA barcoding
- (2016) Eric Coissac et al. MOLECULAR ECOLOGY
- metaBIT, an integrative and automated metagenomic pipeline for analysing microbial profiles from high-throughput sequencing shotgun data
- (2016) Guillaume Louvel et al. Molecular Ecology Resources
- How to limit false positives in environmental DNA and metabarcoding?
- (2016) Gentile Francesco Ficetola et al. Molecular Ecology Resources
- Postglacial viability and colonization in North America’s ice-free corridor
- (2016) Mikkel W. Pedersen et al. NATURE
- Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley
- (2016) Martin Mascher et al. NATURE GENETICS
- Lake sedimentary DNA accurately records 20thCentury introductions of exotic conifers in Scotland
- (2016) Per Sjögren et al. NEW PHYTOLOGIST
- A protocol for subsampling Late Quaternary coprolites for multi-proxy analysis
- (2016) Jamie R. Wood et al. QUATERNARY SCIENCE REVIEWS
- Fast and sensitive taxonomic classification for metagenomics with Kaiju
- (2016) Peter Menzel et al. Nature Communications
- Temporal Succession of Ancient Phytoplankton Community in Qinghai Lake and Implication for Paleo-environmental Change
- (2016) Gaoyuan Li et al. Scientific Reports
- An evaluation of the accuracy and speed of metagenome analysis tools
- (2016) Stinus Lindgreen et al. Scientific Reports
- Using metabarcoding to reveal and quantify plant-pollinator interactions
- (2016) André Pornon et al. Scientific Reports
- Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity
- (2015) Philip Francis Thomsen et al. BIOLOGICAL CONSERVATION
- CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers
- (2015) Rachid Ounit et al. BMC GENOMICS
- The ecology of environmental DNA and implications for conservation genetics
- (2015) Matthew A. Barnes et al. CONSERVATION GENETICS
- Two thousand–year reconstruction of livestock production intensity in France using sediment-archived fecal Bacteroidales and source-specific mitochondrial markers
- (2015) David Etienne et al. HOLOCENE
- Sedimentary ancient DNA from Lake Skartjørna, Svalbard: Assessing the resilience of arctic flora to Holocene climate change
- (2015) Inger Greve Alsos et al. HOLOCENE
- Microbial DNA records historical delivery of anthropogenic mercury
- (2015) Alexandre J Poulain et al. ISME Journal
- Temporal trends in cyanobacteria revealed through DNA and pigment analyses of temperate lake sediment cores
- (2015) S. Pal et al. JOURNAL OF PALEOLIMNOLOGY
- A new tool to trace past human presence from lake sediments: the human-specific molecular markerBacteroidesstrain HF 183
- (2015) JACEK MADEJA JOURNAL OF QUATERNARY SCIENCE
- Is Planktonic Diversity Well Recorded in Sedimentary DNA? Toward the Reconstruction of Past Protistan Diversity
- (2015) Eric Capo et al. MICROBIAL ECOLOGY
- Advances and Applications of Single-Cell Sequencing Technologies
- (2015) Yong Wang et al. MOLECULAR CELL
- Reconstructing long-term human impacts on plant communities: an ecological approach based on lake sediment DNA
- (2015) Johan Pansu et al. MOLECULAR ECOLOGY
- Statistical approaches to account for false-positive errors in environmental DNA samples
- (2015) José J. Lahoz-Monfort et al. Molecular Ecology Resources
- A framework for estimating the sensitivity of eDNA surveys
- (2015) Elise M. Furlan et al. Molecular Ecology Resources
- Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies
- (2015) Ida Baerholm Schnell et al. Molecular Ecology Resources
- Reconstructing ancient genomes and epigenomes
- (2015) Ludovic Orlando et al. NATURE REVIEWS GENETICS
- How have studies of ancient DNA from sediments contributed to the reconstruction of Quaternary floras?
- (2015) H. John B. Birks et al. NEW PHYTOLOGIST
- EBI metagenomics in 2016 - an expanding and evolving resource for the analysis and archiving of metagenomic data
- (2015) Alex Mitchell et al. NUCLEIC ACIDS RESEARCH
- Lake Store Finnsjøen – a key for understanding Lateglacial/early Holocene vegetation and ice sheet dynamics in the central Scandes Mountains
- (2015) Aage Paus et al. QUATERNARY SCIENCE REVIEWS
- Post-glacial dispersal patterns of Northern pike inferred from an 8800 year old pike (Esox cf. lucius) skull from interior Alaska
- (2015) Matthew J. Wooller et al. QUATERNARY SCIENCE REVIEWS
- Lake sediment multi-taxon DNA from North Greenland records early post-glacial appearance of vascular plants and accurately tracks environmental changes
- (2015) L.S. Epp et al. QUATERNARY SCIENCE REVIEWS
- Comment on "Sedimentary DNA from a submerged site reveals wheat in the British Isles 8000 years ago"
- (2015) K. D. Bennett SCIENCE
- Genetic data from algae sedimentary DNA reflect the influence of environment over geography
- (2015) Kathleen R. Stoof-Leichsenring et al. Scientific Reports
- Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification
- (2015) Kirsten A. Ziesemer et al. Scientific Reports
- MIG-seq: an effective PCR-based method for genome-wide single-nucleotide polymorphism genotyping using the next-generation sequencing platform
- (2015) Yoshihisa Suyama et al. Scientific Reports
- A RESTful API for Accessing Microbial Community Data for MG-RAST
- (2015) Andreas Wilke et al. PLoS Computational Biology
- Contesting the presence of wheat in the British Isles 8,000 years ago by assessing ancient DNA authenticity from low-coverage data
- (2015) Clemens L Weiß et al. eLife
- The origin and evolution of maize in the Southwestern United States
- (2015) Rute R. da Fonseca et al. Nature Plants
- Of Paleo-Genes and Perch: What if an “Alien” Is Actually a Native?
- (2015) J. Curt Stager et al. PLoS One
- Variation in Pollen-Donor Composition among Pollinators in an Entomophilous Tree Species, Castanea crenata, Revealed by Single-Pollen Genotyping
- (2015) Yoichi Hasegawa et al. PLoS One
- From Benchtop to Desktop: Important Considerations when Designing Amplicon Sequencing Workflows
- (2015) Dáithí C. Murray et al. PLoS One
- Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol
- (2015) Vasco Elbrecht et al. PLoS One
- Temporal changes in the contribution of methane-oxidizing bacteria to the biomass of chironomid larvae determined using stable carbon isotopes and ancient DNA
- (2014) Simon Belle et al. JOURNAL OF PALEOLIMNOLOGY
- Amplification of DNA in sediment cores to detect historic Planktothrix occurrence in three Norwegian lakes
- (2014) Marcia Kyle et al. JOURNAL OF PALEOLIMNOLOGY
- Using palaeoenvironmental DNA to reconstruct past environments: progress and prospects
- (2014) NICOLAS J. RAWLENCE et al. JOURNAL OF QUATERNARY SCIENCE
- Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data
- (2014) Gentile F. Ficetola et al. Molecular Ecology Resources
- Fifty thousand years of Arctic vegetation and megafaunal diet
- (2014) Eske Willerslev et al. NATURE
- A new era in palaeomicrobiology: prospects for ancient dental calculus as a long-term record of the human oral microbiome
- (2014) C. Warinner et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Proxy comparison in ancient peat sediments: pollen, macrofossil and plant DNA
- (2014) L. Parducci et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Ancient and modern environmental DNA
- (2014) Mikkel Winther Pedersen et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Alkenone distribution in Lake Van sediment over the last 270 ka: influence of temperature and haptophyte species composition
- (2014) Marie-Ève Randlett et al. QUATERNARY SCIENCE REVIEWS
- Recent advances in ancient DNA research and their implications for archaeobotany
- (2014) Terence A. Brown et al. VEGETATION HISTORY AND ARCHAEOBOTANY
- Long livestock farming history and human landscape shaping revealed by lake sediment DNA
- (2014) Charline Giguet-Covex et al. Nature Communications
- Identification of Photosynthetic Plankton Communities Using Sedimentary Ancient DNA and Their Response to late-Holocene Climate Change on the Tibetan Plateau
- (2014) Weiguo Hou et al. Scientific Reports
- Kraken: ultrafast metagenomic sequence classification using exact alignments
- (2014) Derrick E Wood et al. GENOME BIOLOGY
- mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters
- (2013) Hákon Jónsson et al. BIOINFORMATICS
- Use of Ancient Sedimentary DNA as a Novel Conservation Tool for High-Altitude Tropical Biodiversity
- (2013) SANNE BOESSENKOOL et al. CONSERVATION BIOLOGY
- DNA analysis for section identification of individualPinuspollen grains from Belukha glacier, Altai Mountains, Russia
- (2013) Fumio Nakazawa et al. Environmental Research Letters
- Molecular- and pollen-based vegetation analysis in lake sediments from central Scandinavia
- (2013) Laura Parducci et al. MOLECULAR ECOLOGY
- Amplicon pyrosequencing late Pleistocene permafrost: the removal of putative contaminant sequences and small-scale reproducibility
- (2013) Teresita M. Porter et al. Molecular Ecology Resources
- DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet
- (2013) M. De Barba et al. Molecular Ecology Resources
- Metagenomic species profiling using universal phylogenetic marker genes
- (2013) Shinichi Sunagawa et al. NATURE METHODS
- Pollinator-Mediated Selection on Flower Color, Flower Scent and Flower Morphology of Hemerocallis: Evidence from Genotyping Individual Pollen Grains On the Stigma
- (2013) Shun K. Hirota et al. PLoS One
- A comparative study of ancient environmental DNA to pollen and macrofossils from lake sediments reveals taxonomic overlap and additional plant taxa
- (2013) Mikkel Winther Pedersen et al. QUATERNARY SCIENCE REVIEWS
- Genomes from Metagenomics
- (2013) I. Sharon et al. SCIENCE
- Ancient DNA Damage
- (2013) J. Dabney et al. Cold Spring Harbor Perspectives in Biology
- Using flow cytometry to estimate pollen DNA content: improved methodology and applications
- (2012) Paul Kron et al. ANNALS OF BOTANY
- Improving ancient DNA read mapping against modern reference genomes
- (2012) Mikkel Schubert et al. BMC GENOMICS
- Geographic distance and pH drive bacterial distribution in alkaline lake sediments across Tibetan Plateau
- (2012) Jinbo Xiong et al. ENVIRONMENTAL MICROBIOLOGY
- Development of a real-time PCR method for the detection of fossil 16S rDNA fragments of phototrophic sulfur bacteria in the sediments of Lake Cadagno
- (2012) D. F. RAVASI et al. Geobiology
- The future of environmental DNA in ecology
- (2012) NIGEL G. YOCCOZ MOLECULAR ECOLOGY
- DNA from soil mirrors plant taxonomic and growth form diversity
- (2012) N. G. YOCCOZ et al. MOLECULAR ECOLOGY
- Environmental DNA
- (2012) PIERRE TABERLET et al. MOLECULAR ECOLOGY
- Hidden diversity in diatoms of Kenyan Lake Naivasha: a genetic approach detects temporal variation
- (2012) KATHLEEN R. STOOF-LEICHSENRING et al. MOLECULAR ECOLOGY
- Towards next-generation biodiversity assessment using DNA metabarcoding
- (2012) PIERRE TABERLET et al. MOLECULAR ECOLOGY
- Metagenomic microbial community profiling using unique clade-specific marker genes
- (2012) Nicola Segata et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- GenBank
- (2012) Dennis A. Benson et al. NUCLEIC ACIDS RESEARCH
- Temporal Patterns of Nucleotide Misincorporations and DNA Fragmentation in Ancient DNA
- (2012) Susanna Sawyer et al. PLoS One
- Assessment of the Food Habits of the Moroccan Dorcas Gazelle in M’Sabih Talaa, West Central Morocco, Using the trnL Approach
- (2012) Moulay Abdeljalil Ait Baamrane et al. PLoS One
- The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils
- (2012) M. E. Allentoft et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Representation of flora and vegetation in Quaternary fossil assemblages: known and unknown knowns and unknowns
- (2012) Stephen T. Jackson QUATERNARY SCIENCE REVIEWS
- Glacial Survival of Boreal Trees in Northern Scandinavia
- (2012) L. Parducci et al. SCIENCE
- Quantitative PCR Enumeration of Total/Toxic Planktothrix rubescens and Total Cyanobacteria in Preserved DNA Isolated from Lake Sediments
- (2011) Olga Savichtcheva et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Population dynamics and genetic changes of Picea abies in the South Carpathians revealed by pollen and ancient DNA analyses
- (2011) Enikő K Magyari et al. BMC EVOLUTIONARY BIOLOGY
- Ancient DNA from lake sediments: Bridging the gap between paleoecology and genetics
- (2011) Lynn L Anderson-Carpenter et al. BMC EVOLUTIONARY BIOLOGY
- DNA extraction, amplification and analysis of the 28S rRNA portion in sediment-buried copepod DNA in the Great Wall Bay and Xihu Lake, Antarctica
- (2011) Z.-H. Xu et al. JOURNAL OF PLANKTON RESEARCH
- Organic carbon burial efficiency in lake sediments controlled by oxygen exposure time and sediment source
- (2011) Sebastian Sobek et al. LIMNOLOGY AND OCEANOGRAPHY
- A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability
- (2011) TINA JØRGENSEN et al. MOLECULAR ECOLOGY
- Meta-barcoding of ‘dirt’ DNA from soil reflects vertebrate biodiversity
- (2011) KENNETH ANDERSEN et al. MOLECULAR ECOLOGY
- Islands in the ice: detecting past vegetation on Greenlandic nunataks using historical records and sedimentary ancient DNA Meta-barcoding
- (2011) TINA JØRGENSEN et al. MOLECULAR ECOLOGY
- Molecular profiling of diatom assemblages in tropical lake sediments using taxon-specific PCR and Denaturing High-Performance Liquid Chromatography (PCR-DHPLC)
- (2011) LAURA S. EPP et al. Molecular Ecology Resources
- Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw
- (2011) Rachel Mackelprang et al. NATURE
- An In silico approach for the evaluation of DNA barcodes
- (2010) Gentile Ficetola et al. BMC GENOMICS
- The Mk II sampler: a device to collect sediment cores for analysis of uncontaminated DNA
- (2010) D. T. Feek et al. JOURNAL OF PALEOLIMNOLOGY
- Using next-generation sequencing for molecular reconstruction of past Arctic vegetation and climate
- (2010) J. H. SØNSTEBØ et al. Molecular Ecology Resources
- The European Nucleotide Archive
- (2010) R. Leinonen et al. NUCLEIC ACIDS RESEARCH
- An Efficient Multistrategy DNA Decontamination Procedure of PCR Reagents for Hypersensitive PCR Applications
- (2010) Sophie Champlot et al. PLoS One
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Plant leaf mass loss and DNA release in freshwater sediments
- (2009) John Poté et al. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY
- DNA-based analysis of planktonic methanotrophs in a stratified lake
- (2009) HISAYA KOJIMA et al. FRESHWATER BIOLOGY
- Analysing diet of small herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures
- (2009) Eeva M Soininen et al. Frontiers in Zoology
- Historical genetics on a sediment core from a Kenyan lake: intraspecific genotype turnover in a tropical rotifer is related to past environmental changes
- (2009) Laura S. Epp et al. JOURNAL OF PALEOLIMNOLOGY
- Pollen donor composition during the early phases of reproduction revealed by DNA genotyping of pollen grains and seeds ofCastanea crenata
- (2009) Yoichi Hasegawa et al. NEW PHYTOLOGIST
- Refugia revisited: individualistic responses of species in space and time
- (2009) J. R. Stewart et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Integrated palynological and molecular analyses of late Holocene deposits from Lake Miłkowskie (NE Poland): Verification of local human impact on environment
- (2009) Jacek Madeja et al. QUATERNARY INTERNATIONAL
- Pollination efficiencies of flower-visiting insects as determined by direct genetic analysis of pollen origin
- (2008) Y. Matsuki et al. AMERICAN JOURNAL OF BOTANY
- Extracellular DNA in soil and sediment: fate and ecological relevance
- (2008) G. Pietramellara et al. BIOLOGY AND FERTILITY OF SOILS
- Sources for sedimentary bacteriohopanepolyols as revealed by 16S rDNA stratigraphy
- (2008) Marco J. L. Coolen et al. ENVIRONMENTAL MICROBIOLOGY
- Paleoecology meets genetics: deciphering past vegetational dynamics
- (2008) Feng Sheng Hu et al. FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
- The HTH sediment corer
- (2008) Ingemar Renberg et al. JOURNAL OF PALEOLIMNOLOGY
- Bacterial ancient DNA as an indicator of human presence in the past: its correlation with palynological and archaeological data
- (2008) Jacek Madeja et al. JOURNAL OF QUATERNARY SCIENCE
- Recovery of DNA and pollen from New Zealand lake sediments
- (2007) Elizabeth Matisoo-Smith et al. QUATERNARY INTERNATIONAL
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