metaBIT, an integrative and automated metagenomic pipeline for analysing microbial profiles from high-throughput sequencing shotgun data
出版年份 2016 全文链接
标题
metaBIT, an integrative and automated metagenomic pipeline for analysing microbial profiles from high-throughput sequencing shotgun data
作者
关键词
-
出版物
Molecular Ecology Resources
Volume 16, Issue 6, Pages 1415-1427
出版商
Wiley
发表日期
2016-05-30
DOI
10.1111/1755-0998.12546
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- InteMAP: Integrated metagenomic assembly pipeline for NGS short reads
- (2015) Binbin Lai et al. BMC BIOINFORMATICS
- The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies
- (2015) J Paul Brooks et al. BMC MICROBIOLOGY
- Evolutionary Genomics and Conservation of the Endangered Przewalski’s Horse
- (2015) Clio Der Sarkissian et al. CURRENT BIOLOGY
- MetaPhlAn2 for enhanced metagenomic taxonomic profiling
- (2015) Duy Tin Truong et al. NATURE METHODS
- Reconstructing ancient genomes and epigenomes
- (2015) Ludovic Orlando et al. NATURE REVIEWS GENETICS
- Molecular cartography of the human skin surface in 3D
- (2015) Amina Bouslimani et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments
- (2015) Pablo Librado et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structure and function of the global ocean microbiome
- (2015) S. Sunagawa et al. SCIENCE
- Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe
- (2015) Gemma L. Kay et al. Nature Communications
- Pros and cons of methylation-based enrichment methods for ancient DNA
- (2015) Andaine Seguin-Orlando et al. Scientific Reports
- Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification
- (2015) Kirsten A. Ziesemer et al. Scientific Reports
- The Earth Microbiome project: successes and aspirations
- (2014) Jack A Gilbert et al. BMC BIOLOGY
- Comparison of seven methods for extraction of bacterial DNA from fecal and cecal samples of mice
- (2014) Janina Ferrand et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Shotgun microbial profiling of fossil remains
- (2014) C. Der Sarkissian et al. MOLECULAR ECOLOGY
- Genomics of schizophrenia: time to consider the gut microbiome?
- (2014) T G Dinan et al. MOLECULAR PSYCHIATRY
- Pathogens and host immunity in the ancient human oral cavity
- (2014) Christina Warinner et al. NATURE GENETICS
- Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX
- (2014) Mikkel Schubert et al. Nature Protocols
- Parallel detection of ancient pathogens via array-based DNA capture
- (2014) K. I. Bos et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Ancient and modern environmental DNA
- (2014) Mikkel Winther Pedersen et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Prehistoric genomes reveal the genetic foundation and cost of horse domestication
- (2014) Mikkel Schubert et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ancient pathogen DNA in archaeological samples detected with a Microbial Detection Array
- (2014) Alison M. Devault et al. Scientific Reports
- mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters
- (2013) Hákon Jónsson et al. BIOINFORMATICS
- Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes
- (2013) Pascal Hingamp et al. ISME Journal
- Computational meta'omics for microbial community studies
- (2013) N. Segata et al. Molecular Systems Biology
- Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
- (2013) Ludovic Orlando et al. NATURE
- Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions
- (2013) Christina J Adler et al. NATURE GENETICS
- Ligation Bias in Illumina Next-Generation DNA Libraries: Implications for Sequencing Ancient Genomes
- (2013) Andaine Seguin-Orlando et al. PLoS One
- Length and GC-biases during sequencing library amplification: A comparison of various polymerase-buffer systems with ancient and modern DNA sequencing libraries
- (2012) Jesse Dabney et al. BIOTECHNIQUES
- A framework for human microbiome research
- (2012) NATURE
- A metagenome-wide association study of gut microbiota in type 2 diabetes
- (2012) Junjie Qin et al. NATURE
- Functional interactions between the gut microbiota and host metabolism
- (2012) Valentina Tremaroli et al. NATURE
- Metagenomic microbial community profiling using unique clade-specific marker genes
- (2012) Nicola Segata et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Cross-biome metagenomic analyses of soil microbial communities and their functional attributes
- (2012) N. Fierer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Interactive metagenomic visualization in a Web browser
- (2011) Brian D Ondov et al. BMC BIOINFORMATICS
- A draft genome of Yersinia pestis from victims of the Black Death
- (2011) Kirsten I. Bos et al. NATURE
- The skin microbiome
- (2011) Elizabeth A. Grice et al. NATURE REVIEWS MICROBIOLOGY
- An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia
- (2011) M. Rasmussen et al. SCIENCE
- Metagenomic biomarker discovery and explanation
- (2011) Nicola Segata et al. GENOME BIOLOGY
- Ancient human genome sequence of an extinct Palaeo-Eskimo
- (2010) Morten Rasmussen et al. NATURE
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale
- (2009) C. L. Lauber et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Sequencing technologies — the next generation
- (2009) Michael L. Metzker NATURE REVIEWS GENETICS
- Bacterial Community Variation in Human Body Habitats Across Space and Time
- (2009) E. K. Costello et al. SCIENCE
- Sequencing the nuclear genome of the extinct woolly mammoth
- (2008) Webb Miller et al. NATURE
- A core gut microbiome in obese and lean twins
- (2008) Peter J. Turnbaugh et al. NATURE
- Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes
- (2008) M. T. P. Gilbert et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started