The future of environmental DNA in ecology

DNA from soil mirrors plant taxonomic and growth form diversity

(2012) N. G. YOCCOZ et al.   MOLECULAR ECOLOGY

Environmental DNA

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Carnivore diet analysis based on next-generation sequencing: application to the leopard cat (Prionailurus bengalensis) in Pakistan

(2012) WASIM SHEHZAD et al.   MOLECULAR ECOLOGY

Biodiversity assessment: State-of-the-art techniques in phylogenomics and species identification

(2011) P. R. Steele et al.   AMERICAN JOURNAL OF BOTANY

Improving occupancy estimation when two types of observational error occur: non-detection and species misidentification

(2011) David A. Miller et al.   ECOLOGY

Current progress in DNA barcoding and future implications for entomology

(2011) Utsugi JINBO et al.   ENTOMOLOGICAL SCIENCE

The bacterial biogeography of British soils

(2011) Robert I. Griffiths et al.   ENVIRONMENTAL MICROBIOLOGY

Influence of management practices on large herbivore diet—Case of European bison in Białowieża Primeval Forest (Poland)

(2011) Rafał Kowalczyk et al.   FOREST ECOLOGY AND MANAGEMENT

Utilization of stomach content DNA to determine diet diversity in piscivorous fishes

(2011) L. Carreon-Martinez et al.   JOURNAL OF FISH BIOLOGY

Incorporation of DNA barcoding into a large-scale biomonitoring program: opportunities and pitfalls

(2011) Erik M. Pilgrim et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

Can DNA barcodes of stream macroinvertebrates improve descriptions of community structure and water quality?

(2011) Bernard W. Sweeney et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

Density estimation in a wolverine population using spatial capture-recapture models

(2011) J. Andrew Royle et al.   JOURNAL OF WILDLIFE MANAGEMENT

Who is eating what: diet assessment using next generation sequencing

(2011) FRANCOIS POMPANON et al.   MOLECULAR ECOLOGY

Eating local: influences of habitat on the diet of little brown bats (Myotis lucifugus)

(2011) E. L. CLARE et al.   MOLECULAR ECOLOGY

Molecular detection of trophic links in a complex insect host-parasitoid food web

(2011) JAN HRCEK et al.   Molecular Ecology Resources

Molecular scatology: how to improve prey DNA detection success in avian faeces?

(2011) JOHANNES OEHM et al.   Molecular Ecology Resources

Proportion of prey consumed can be determined from faecal DNA using real-time PCR

(2011) ELLA BOWLES et al.   Molecular Ecology Resources

Increased flood risk linked to global warming

(2011) Quirin Schiermeier   NATURE

Biogeography and ecology: towards the integration of two disciplines

(2011) R. E. Ricklefs et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Intrapopulation Variability Shaping Isotope Discrimination and Turnover: Experimental Evidence in Arctic Foxes

(2011) Nicolas Lecomte et al.   PLoS One

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

(2011) Mehrdad Hajibabaei et al.   PLoS One

Barcoding a Quantified Food Web: Crypsis, Concepts, Ecology and Hypotheses

(2011) M. Alex Smith et al.   PLoS One

DNA-Based Faecal Dietary Analysis: A Comparison of qPCR and High Throughput Sequencing Approaches

(2011) Dáithí C. Murray et al.   PLoS One

Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments

(2011) Béatrice Lecroq et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global land use change, economic globalization, and the looming land scarcity

(2011) Eric F. Lambin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Will Computers Crash Genomics?

(2011) E. Pennisi   SCIENCE

Deflating the Genomic Bubble

(2011) J. P. Evans et al.   SCIENCE

The Biodiversity and Ecosystem Services Science-Policy Interface

(2011) C. Perrings et al.   SCIENCE

Approximate Bayesian Computation in Evolution and Ecology

(2010) Mark A. Beaumont   Annual Review of Ecology Evolution and Systematics

Integrating DNA barcode data and taxonomic practice: Determination, discovery, and description

(2010) Paul Z. Goldstein et al.   BIOESSAYS

Hope for Tropical Biodiversity through True Bioliteracy

(2010) Daniel H. Janzen   BIOTROPICA

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

(2010) Eva Bellemain et al.   BMC MICROBIOLOGY

Pyrosequencing faecal DNA to determine diet of little penguins: is what goes in what comes out?

(2010) Bruce E. Deagle et al.   CONSERVATION GENETICS

Sampling in ecology and evolution - bridging the gap between theory and practice

(2010) Cécile H. Albert et al.   ECOGRAPHY

Using DNA to assess errors in tropical tree identifications: How often are ecologists wrong and when does it matter?

(2010) Kyle G. Dexter et al.   ECOLOGICAL MONOGRAPHS

New insights on diet variability revealed by DNA barcoding and high-throughput pyrosequencing: chamois diet in autumn as a case study

(2010) Gilles Rayé et al.   ECOLOGICAL RESEARCH

Are exercises like this a good use of anybody's time?

(2010) James S. Hodges   ECOLOGY

Navigating the multiple meanings of β diversity: a roadmap for the practicing ecologist

(2010) Marti J. Anderson et al.   ECOLOGY LETTERS

Ecological assessment of estuarine sediments by pyrosequencing eukaryotic ribosomal DNA

(2010) Anthony A Chariton et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

Are population outbreaks in sub-arctic geometrids terminated by larval parasitoids?

(2010) Tino Schott et al.   JOURNAL OF ANIMAL ECOLOGY

Expectations, validity, and reality in omics

(2010) John P.A. Ioannidis   JOURNAL OF CLINICAL EPIDEMIOLOGY

Metagenomics: Facts and Artifacts, and Computational Challenges

(2010) John C. Wooley et al.   JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY

Reproducibility of species lists, visual cover estimates and frequency methods for recording high-mountain vegetation

(2010) Pascal Vittoz et al.   JOURNAL OF VEGETATION SCIENCE

After 7 years and 1000 citations: Comparative assessment of the DNA barcoding and the DNA taxonomy proposals for taxonomists and non-taxonomists

(2010) Fabrice Teletchea   Mitochondrial DNA

Species abundance distributions and richness estimations in fungal metagenomics - lessons learned from community ecology

(2010) MARTIN UNTERSEHER et al.   MOLECULAR ECOLOGY

Using next-generation sequencing for molecular reconstruction of past Arctic vegetation and climate

(2010) J. H. SØNSTEBØ et al.   Molecular Ecology Resources

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

(2010) Leho Tedersoo et al.   NEW PHYTOLOGIST

Biodiversity's Big Wet Secret: The Global Distribution of Marine Biological Records Reveals Chronic Under-Exploration of the Deep Pelagic Ocean

(2010) Thomas J. Webb et al.   PLoS One

Detecting ingested plant DNA in soil-living insect larvae

(2010) Karin Staudacher et al.   SOIL BIOLOGY & BIOCHEMISTRY

Approximate Bayesian Computation (ABC) in practice

(2010) Katalin Csilléry et al.   TRENDS IN ECOLOGY & EVOLUTION

Distorted Views of Biodiversity: Spatial and Temporal Bias in Species Occurrence Data

(2010) Elizabeth H. Boakes et al.   PLOS BIOLOGY

DNA barcode analysis: a comparison of phylogenetic and statistical classification methods

(2009) Frederic Austerlitz et al.   BMC BIOINFORMATICS

Reliability for detecting composition and changes of microbial communities by T-RFLP genetic profiling

(2009) Martin Hartmann et al.   FEMS MICROBIOLOGY ECOLOGY

Analysing diet of small herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures

(2009) Eeva M Soininen et al.   Frontiers in Zoology

Long-term ecological sites: musings on the future, as seen (dimly) from the past

(2009) H. H. JANZEN   GLOBAL CHANGE BIOLOGY

Universal DNA-Based Methods for Assessing the Diet of Grazing Livestock and Wildlife from Feces

(2009) Anthony Pegard et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Land use improves spatial predictions of mountain plant abundance but not presence-absence

(2009) Christophe F. Randin et al.   JOURNAL OF VEGETATION SCIENCE

Integration of DNA barcoding into an ongoing inventory of complex tropical biodiversity

(2009) DANIEL H. JANZEN et al.   Molecular Ecology Resources

Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity

(2009) DOROTA L. PORAZINSKA et al.   Molecular Ecology Resources

New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: thetrnL approach

(2009) ALICE VALENTINI et al.   Molecular Ecology Resources

Species detection using environmental DNA from water samples

(2008) G. F. Ficetola et al.   Biology Letters

New tools for discovering and characterizing microbial diversity

(2008) Erick Cardenas et al.   CURRENT OPINION IN BIOTECHNOLOGY

Incorporating uncertainty and prior information into stable isotope mixing models

(2008) Jonathan W. Moore et al.   ECOLOGY LETTERS

Low impact of climate change on subalpine grasslands in the Swiss Northern Alps

(2008) PASCAL VITTOZ et al.   GLOBAL CHANGE BIOLOGY

Climate change and outbreaks of the geometrids Operophtera brumata and Epirrita autumnata in subarctic birch forest: evidence of a recent outbreak range expansion

(2008) Jane U. Jepsen et al.   JOURNAL OF ANIMAL ECOLOGY

Hierarchical Bayes estimation of species richness and occupancy in spatially replicated surveys

(2008) M. Kéry et al.   JOURNAL OF APPLIED ECOLOGY

INVITED REVIEW: Molecular analysis of predation: a review of best practice for DNA-based approaches

(2008) R. A. KING et al.   MOLECULAR ECOLOGY

The Ecological implications of a Yakutian mammoth's last meal

(2008) Bas van Geel et al.   QUATERNARY RESEARCH

Niche dynamics in space and time

(2008) Peter B. Pearman et al.   TRENDS IN ECOLOGY & EVOLUTION

DNA barcoding for ecologists

(2008) Alice Valentini et al.   TRENDS IN ECOLOGY & EVOLUTION

Sequencing breakthroughs for genomic ecology and evolutionary biology

(2007) MATTHEW E. HUDSON   Molecular Ecology Resources

Predicting global change impacts on plant species’ distributions: Future challenges

(2007) Wilfried Thuiller et al.   PERSPECTIVES IN PLANT ECOLOGY EVOLUTION AND SYSTEMATICS